Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02870 529 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 514 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 507 / 2e-179 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 448 / 9e-156 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 303 / 1e-99 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 202 / 2e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 192 / 1e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 88 / 8e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 82 / 8e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 80 / 3e-16 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037196 [exp] 663 / 0 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 652 / 0 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10030489 [exp] 639 / 0 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 355 / 2e-120 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 331 / 7e-111 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 330 / 3e-110 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 152 / 8e-43 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 81 / 3e-16 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 81 / 3e-16 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 485 / 4e-170 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.019G042100 [exp] 354 / 7e-119 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 353 / 2e-118 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 231 / 3e-71 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 212 / 7e-64 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 100 / 5e-23 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G091900 [exp] 94 / 1e-20 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 92 / 4e-20 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 88 / 8e-19 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 88 / 9e-19 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10036735 pacid=23171012 polypeptide=Lus10036735 locus=Lus10036735.g ID=Lus10036735.BGIv1.0 annot-version=v1.0 ATGTTGGAAGGCCGGTCCTGCGATTCCTGCCTGGTGACTAGAGTGTTTGGTGGTTCCTGCCAATCGGATTCTCAGTGGAATTTCATGAATTACTTGCCTG GTGGTGGAAGCAGCAGCAAGCACTCGCTCGAGAATTCGGAGGATGATTTTCGACCAATCAAGTCTCGTCGATTATCAGAGAGGACTCTCAGCCGTGACTA CCACCAGTCCGATTCGGATGATCAGGCCGGTCAGTCGTCCGATTCGACCACCCTTATTGACGCAATAGGAAGGGACAATTCGATTAATTGTCTGATACGC ATCTCTCGTTCCGATTACGGATCCGTAGCCTCGCTCAACAGAAATTTCCGGTCCTTGTTTCGGAGCGGGGACATATACAAGCTGAGGAGGCAGCGGGGAG TGATCGAACACTGGGTTTACTTCTCGTGCCACTTGCTCGAATGGGAGGCCTTCGATCCGATTAGCCACCGGTGGATGAATTTGCCGAGAATGCCGGCCAA CGAGTGCTTCATGTGGTCTGATAAGGAGTCGTTGGCCGTGGGGACTGAACTTCTCGTATTCGGTAAGGAAGTGATGTCCCATTACATATACAGATACAGC ATTTTGACGAATTCATGGACTTCCGGGATGAAGATGAACTTCCCTAGATGCTTGTTTGGTTCCGCTAGTCTCGGAGAAATTGCGATTTTGGCCGGAGGAT GCGATTCTCAAAGGAACGTCTTGAGTTGCGCCGAAATGTACAATTCCGAGACCCACACTTGGCTGACGCTCCCGAGCATGAATAAACGGAGGAAGATGTG CTCGGCGGTGTTTATGGATGGAAAATTCTACGTAATTGGCGGAATCGCTGCGGACAATGTCACTGTTCTTACCTGCGGAGAAGAATACGACTTGGAAGCC AAGAAATGGACCGAAATTCCTAATATGTCCCCTGGGAGGATCGTCCCTCTCGTCGAGGGAATGTCTGCGGCTGCTGGTGCTCCGCCGTTACTCGCTGTAG TGAATAAACAACTCTACGCTGCCGATCATAGTGATATGGAGGTGAAGAGGTACGATAAGGAACGAAAAGTTTGGGTTACTCTTGGAAGGTTGCCCGAACG TGCTTGCTCGATGAACGGTTGGGGACTCGCGTTCAGGGCGTGTGGGGATCGGCTGATTGTGATCGGTGGACCTAGGACGTCGGGGGAAGGTTTCATCGAG CTGAACTCGTGGGTGCCGAGTGAAGAAGGGGCTCCTCGATGGGACCTGCTCGAGAGGAAGCAGTCGGTTAATTTCGTGTATAATTGCGCGGTGATGGGAT GCTGA
AA sequence Show only first row Show all	>Lus10036735 pacid=23171012 polypeptide=Lus10036735 locus=Lus10036735.g ID=Lus10036735.BGIv1.0 annot-version=v1.0 MLEGRSCDSCLVTRVFGGSCQSDSQWNFMNYLPGGGSSSKHSLENSEDDFRPIKSRRLSERTLSRDYHQSDSDDQAGQSSDSTTLIDAIGRDNSINCLIR ISRSDYGSVASLNRNFRSLFRSGDIYKLRRQRGVIEHWVYFSCHLLEWEAFDPISHRWMNLPRMPANECFMWSDKESLAVGTELLVFGKEVMSHYIYRYS ILTNSWTSGMKMNFPRCLFGSASLGEIAILAGGCDSQRNVLSCAEMYNSETHTWLTLPSMNKRRKMCSAVFMDGKFYVIGGIAADNVTVLTCGEEYDLEA KKWTEIPNMSPGRIVPLVEGMSAAAGAPPLLAVVNKQLYAADHSDMEVKRYDKERKVWVTLGRLPERACSMNGWGLAFRACGDRLIVIGGPRTSGEGFIE LNSWVPSEEGAPRWDLLERKQSVNFVYNCAVMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	0	1
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	2.2	0.9323
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	2.4	0.8917
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	5.3	0.9011
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	7.2	0.8792
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	7.9	0.8849
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	11.0	0.8905
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	11.7	0.9005
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	13.4	0.8747
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	14.5	0.8741
					Lus10018014 [exp]	15.9	0.8987

Compare expression of checked genes

Lus10036735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.