Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26900 535 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 302 / 4e-94 SLO1 SLOW GROWTH 1 (.1) AT2G29760 296 / 2e-91 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 293 / 1e-90 MEF22 mitochondrial editing factor 22 (.1) AT3G15130 286 / 8e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 285 / 3e-87 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G05240 280 / 8e-87 MEF19 mitochondrial editing factor 19 (.1) AT4G14820 277 / 2e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 266 / 4e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 263 / 7e-81 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037193 [exp] 301 / 3e-100 AT1G26900 219 / 7e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 294 / 2e-90 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 292 / 3e-90 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 292 / 1e-89 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 289 / 2e-88 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 285 / 3e-88 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019735 [exp] 285 / 2e-86 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 280 / 3e-86 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037194 [exp] 263 / 2e-85 AT1G26900 110 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103600 [exp] 306 / 5e-96 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 306 / 2e-95 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 300 / 2e-93 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 300 / 3e-93 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 298 / 1e-92 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G152000 [exp] 297 / 1e-91 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.018G040100 [exp] 297 / 2e-91 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 294 / 2e-90 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 289 / 4e-89 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.005G012600 [exp] 287 / 1e-88 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036736 pacid=23171128 polypeptide=Lus10036736 locus=Lus10036736.g ID=Lus10036736.BGIv1.0 annot-version=v1.0 ATGAACATAAACCAAGCTTCGCGCTTGACTCCAAAGCTCGAAACTTGGTTCAGTCACAATATCCCTAAACCCATCTCGATCGTCTCAACTTCTCAAAATC TCGCCACCCTTCTGCAATCCTGCAATCAGACTTCCGAAATCGTTCAAGTCCATGGCTTCATGGTCAAGACCGGTCTTCAACAAGACCCTTTCTCCGTCAG CAAGCTGCTCGCTTCCTCAATACGAGACTCCCGATACGCTGCTTCAATCTTCGAAAACATCCCAGACCCAAATCTGTTCATGTTCAACTCCATGCTCAGA GCCTATTCCATCAGCGAAACTCCGGGAAAGGCCTTTAATGTTTTCAGTGACTTGAGAGCTCGAGGCATCTTGCTGGATCGGTTCTCTTTCGTCACCACGC TGAAAGCTTGCGCTCGCGAATCGGCTGTTGGAACTGGAACGACGATCCATGGAGTGGTTGTGAGGTCCGGGCATTTACTGTTTGTGGAAGTCAAGAATGG GCTTTTGCATTTGTACGGTGTCTGTGGAGAAATTGATGATGCACGCAAGCTGTTCAACGAAATGCCCGAGAGGAATGATTGGGTCTCGTGGAATATTTTG ATGGTAGCTTCTCCGCCGGATATGGCCATGGGATTGTTCAAGGAGATGTTTAGGCGATGTGAATGTGTCAGTGAGGCTACATTGTTGACTGTCCTGTCGA GTTTCTCCCGATCGGAGGATTCACTTGGAGGTAAGTCCATCCATGGCTATTGCATCAAAACCGGGTTATCCTCGAAAGTTAATATCGCGACTGCTCTTGT CGACATGTACACTAAAACCGGTAGTTTAGATTCAGGGCGTAGGGTTTTTGACGGGACCATAGCTAGGGATGTTGTGCTGTGGAATTGTATGGTACATAAG TATTCCAAAGCTGGACTAATAGATGACGGAATAGCCTTGCTTAAACTGATGAAAGATGAACAAGTGAAGCCGAATTCGTCAACGTTAGCAAGTCTCCTTT CATCTTGTTCCGCCAATGGATCCATCAAGCTCGGAAAATATCTAAGTACATTCGTGGAAGAGGAGGCAATGCCACTCGATGCGGTTCTCGGTACAGCTTT GATTGATATGTTTGCGAAATCCGGGTTTCTCGACAAGGCTATCGACATCTTTGAGAGAATGGTGAGTAAAGATGTCAAGTCATGGACTGCTATGATCATA GGCTATGGAGTTCCCGGCCGGTCGAGGGAAGCTCTTGCGCTCTTGTACAGAATGGAGGAGGAACGATTTGTTCCGAACGAAGTCACGTTCTTGGCTCTAC TTAGTGCTTGCAGCCATGGCGGGATGGTGGATGAAGCAATGGATTGTTTCAGGAGGATGGTCGAACGATACGGTATGGTACCAAAGGTGGAGCATTACGG GTGCATCACTGATTTGTTAGGTCGTGCAGGGTTACTGAAGGTAGCAAGAGGGTTGATCGAGAGTCTGCCGATGATCAGGAACGATGCCACTGCTTGGCGT GCATTGCTTGCGGCGTGTAGAGTGCATGGAGATGTTGAGTTAGGGGAAAAGGCGAAGAGAGTGTTGGTCGAATTGGGTGATCGACATCCTACGGACTCGA TGCTGCTTTCGAGTACTTATGCCGTTGCGGGAAGGTTGGAGGATCATAAAGGCTTGCAGGAAACTGTTGAAGAGTATAAGGAAGTTGGATGTAGCATGAT TGAGGTGGAGAATAGCTAG
AA sequence Show only first row Show all	>Lus10036736 pacid=23171128 polypeptide=Lus10036736 locus=Lus10036736.g ID=Lus10036736.BGIv1.0 annot-version=v1.0 MNINQASRLTPKLETWFSHNIPKPISIVSTSQNLATLLQSCNQTSEIVQVHGFMVKTGLQQDPFSVSKLLASSIRDSRYAASIFENIPDPNLFMFNSMLR AYSISETPGKAFNVFSDLRARGILLDRFSFVTTLKACARESAVGTGTTIHGVVVRSGHLLFVEVKNGLLHLYGVCGEIDDARKLFNEMPERNDWVSWNIL MVASPPDMAMGLFKEMFRRCECVSEATLLTVLSSFSRSEDSLGGKSIHGYCIKTGLSSKVNIATALVDMYTKTGSLDSGRRVFDGTIARDVVLWNCMVHK YSKAGLIDDGIALLKLMKDEQVKPNSSTLASLLSSCSANGSIKLGKYLSTFVEEEAMPLDAVLGTALIDMFAKSGFLDKAIDIFERMVSKDVKSWTAMII GYGVPGRSREALALLYRMEEERFVPNEVTFLALLSACSHGGMVDEAMDCFRRMVERYGMVPKVEHYGCITDLLGRAGLLKVARGLIESLPMIRNDATAWR ALLAACRVHGDVELGEKAKRVLVELGDRHPTDSMLLSSTYAVAGRLEDHKGLQETVEEYKEVGCSMIEVENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10036736 [exp]	0	1
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	8.7	0.7702
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	21.0	0.7241
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	24.4	0.7316
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	27.9	0.6910
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	39.9	0.7071
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	42.3	0.6951
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	43.0	0.6599
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	44.0	0.6813
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	44.1	0.7072
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	52.7	0.6966

Compare expression of checked genes

Lus10036736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.