Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69710 899 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 808 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 763 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G42140 648 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 643 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 640 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 628 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 593 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 494 / 2e-158 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 155 / 2e-40 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037192 [exp] 1746 / 0 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 869 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 768 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 739 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 728 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 645 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 644 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10027273 [exp] 639 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10028600 [exp] 633 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071800 [exp] 864 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 823 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 728 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 714 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 712 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 674 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 658 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 640 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 544 / 7e-177 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 543 / 8e-177 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10036737 pacid=23171101 polypeptide=Lus10036737 locus=Lus10036737.g ID=Lus10036737.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTCACCGAGTTGGTCTTGGCGAGAGAGACATCGACCAGGCCATTACAGCACTTAAGAAAGGATCCTACTTGCTCAAATATGGCCGAAGAG GAAAGCCGAAATTCTGCCCCTTTCAACTTTCAAGTGATGAGTCTGCTTTGATATGGTACTCAGGAAAAGATGAGAAGTCAATCAAACTCAACCAAGTCAC CAAGATCATTCCAGGACAGCGAACAGCAATATTCCAGCGCTATCCTCGCCCGGAGAAGGAATATCAGTCATTTTCTCTGATATATGGCGATAGATCCTTA GATTTGATATGTAAAGACAAGGATGAAGCTGATGTTTGGTTTGTTGGTCTAAAGGCATTAATCACTCATGGAAATTACAACAGGAAATGGAGGATCGACA CTAGAAGCGAGAGCACCCCATCAGAGAGTCCCTATTCGCATACTCGAAGAAACTCTCCATCCATCACACCATTCGACTTAGAGCCAGCAGAAGGTCAAGA TCAGTCATTATTAGACTTGGAAGGAAATCCACCGAACAGAATAATAGGGAAGGCATTCTCCGATATTGTGTCATATACTGTTTCGATCAACAACCGTCCA AACTCAGCAGCAGAGTGTTCCATCAGTACTGTTAGTGATACTAACCCTAGTGGTCGTAGCTCGACTACCGAGCCATTTAGAGTCAGCTTATCTAGTGCTT TAAGCTCGTCGAGCCAGGGCTCGTGCCACGATGATTTTGATGCTTTAGGTGATGTCTTCATATGGGGAGAAGGCAGTGCCGATGGAGCATTAGGTGGTGG AGGAATCGGAAATCAATCAACCGGTTCGAAATCGGATGCTTTGCTACCCAAGGCATTGGAGTCGACCGTTGTTCTCGATGTCTATCGGATCGCGTGTGGT GGAAACCATGCCGCGTTGGTCACAAGACAAGGGGAGATCTTTACATGGGGGGAAGGGCTAGGTGGCAGGCTCGGACATGGAAAAGATGTAAATGCCCCTT ACCCGAAGTTAGTACATAGCATGAGTGGTATGAATGTAGATGTAGTGGCTTGTGGAGTGTACCACACTTGTGCTGTAACGATGTCCGGGGATCTCTACAC ATGGGGAGATGGAGGAGGAAGTGAAGTGAGTCACTGGATCCCGAAACGGGTCACTCATAACATCGAGGGGATCCACGTCTCGAATGTCTCGTGTGGACCG TGGCATACAGCTGCAGTCACGAGTAACGGCCAGCTTTTCACGTTCGGAGATGGGACTCTAGGGACATTAGGTCACGGGGATCGTGCCAGTACTATTGTTC CTCGAGAAGTTGAGTCGCTCAGAGGGTTGAGGACGAAAAGAGTCGCGTGTGGCTTGTGGCACACAGCAGCAGTTGCTGTGGAGGAGGTGAGTGATCCTGT GAATCCAGAAGCAGTGATCTCATTTGGGAAGCTATACACTTGGGGGAGTGGAGATGATGGATGCCTTGGACATGGCAACGAAGAATCGAAACTCGTCCCT CAACAAGTAATTGCTTTAGTTGATGAAAACGTCTCCCAAATAGGTTGTGGACATAACTTTACGGTGGTTTTGACCGCATCGGGACGAGTTTACACCATGG GAAGCGACGCTTATGGACAGCTCGGATGTCCGAAATTGGAGGATGCAAAGGTTCCGCATCTCGTGAAAGGTAAGCTATCAGACTGTACTGTGGAAGATGT CACATGTGGTGCTTACCATGTTGCGGCTCTGACATCGAAATCTGAGGTGTACACTTGGGGAAGAGGTTCGAACGGGCAGTTGGGACACGGAGACAAAGAA AGCAGGAATACGCCTAAACTAGTCGATTTCTTGCGGAGCAAGCAAGTGAAGACCGTAGTATGTGGATCCAATTTCACAGCTATTGTGTGTCTCCACAAAT GGGTAGGCAGCGGGGACCATTCTCTATGCACAGGATGTCGAAACCAGTTCGGGTTTCGTAGAAAGCGCCACAACTGCTACAACTGCGGGCTGGTCTTCTG CAAAGCTTGCAGCGCAAGGAAGTCCCTGAAGGCCTCTCTGGCTCCGAGCACGAACAAACCCTATCGAGTCTGCGATGATTGTTTTCACAAACTGAAGAAG GTGTTAGATTCGATGGTGTCTTTGCCAAAACTTGTTCCTCAAGGTAGAACCCTAAGTTGCAGCCCCATTAGAAGCATGGACTTTGCAGATAGGGAGATAA TACTGCCTAGGTTGTTGTCACAGTACTCTAGAGTTTCGACTCCTGACACGATTCGGGATCCATGGCAATCGAAGCGTCATAATAATACAAAAGGCGGACA AGGGATGCATAACAACCTTGTGTTTCCTACTGTAACGGGGAACTTGCAGTCTGTTAGATTCGGTACACTTCTTAAAGTGCCTACCGTTACTCAAGTAAGC TTGCGGAAGCCCTCACCGAGGCACTCGCCATCTTCGAGTATCGGTCTGAGGTCATCCGGTAGTCTTGATGACACAAGGAGCATGAATGGAGCGAGTTCTT CCGTGGAAGAAATCCATAGTCTAAGGGCGCGGTTAGAAGATCTTACTTGGAGAAACAAACGTCTCGAATCCGAACTGGAAAGGAAATCGAAGCAACTAAA ACAGGTTAAATCCCTGGCTGCTGATGAGGCTGAGAAGTGCAAATCAGCCAAGGAATTGAAAGATATGGCCGAACGATCCCCTCATGCGGAACAAGCTAGC TCAAGCCGGAGTTCCCACGAACTACCACCCGGTGCTAGTGAACTGTCTCAGGAAATTGAACCGAATGGAAACTCGGCAGACAACCACATCCACATGCTGA CATATGGACCCAAAAACCAATCCGAAAAGCTGCAGCATGTTGTACAGGCTGAACCGGGTGTGTTCATAACTCTGTCATCTTTACCAACCGGTGGAAATGA GCTCAAGCGAGTTCGATTCAGCCGGAAGTACTTCTTGGAAGATGAAGCTGAGAGGTGGTGGGAAGAAAAAGGGACCAAGTTTTGTGAGCGTTACAACATA GATACTGACTGA
AA sequence Show only first row Show all	>Lus10036737 pacid=23171101 polypeptide=Lus10036737 locus=Lus10036737.g ID=Lus10036737.BGIv1.0 annot-version=v1.0 MADSHRVGLGERDIDQAITALKKGSYLLKYGRRGKPKFCPFQLSSDESALIWYSGKDEKSIKLNQVTKIIPGQRTAIFQRYPRPEKEYQSFSLIYGDRSL DLICKDKDEADVWFVGLKALITHGNYNRKWRIDTRSESTPSESPYSHTRRNSPSITPFDLEPAEGQDQSLLDLEGNPPNRIIGKAFSDIVSYTVSINNRP NSAAECSISTVSDTNPSGRSSTTEPFRVSLSSALSSSSQGSCHDDFDALGDVFIWGEGSADGALGGGGIGNQSTGSKSDALLPKALESTVVLDVYRIACG GNHAALVTRQGEIFTWGEGLGGRLGHGKDVNAPYPKLVHSMSGMNVDVVACGVYHTCAVTMSGDLYTWGDGGGSEVSHWIPKRVTHNIEGIHVSNVSCGP WHTAAVTSNGQLFTFGDGTLGTLGHGDRASTIVPREVESLRGLRTKRVACGLWHTAAVAVEEVSDPVNPEAVISFGKLYTWGSGDDGCLGHGNEESKLVP QQVIALVDENVSQIGCGHNFTVVLTASGRVYTMGSDAYGQLGCPKLEDAKVPHLVKGKLSDCTVEDVTCGAYHVAALTSKSEVYTWGRGSNGQLGHGDKE SRNTPKLVDFLRSKQVKTVVCGSNFTAIVCLHKWVGSGDHSLCTGCRNQFGFRRKRHNCYNCGLVFCKACSARKSLKASLAPSTNKPYRVCDDCFHKLKK VLDSMVSLPKLVPQGRTLSCSPIRSMDFADREIILPRLLSQYSRVSTPDTIRDPWQSKRHNNTKGGQGMHNNLVFPTVTGNLQSVRFGTLLKVPTVTQVS LRKPSPRHSPSSSIGLRSSGSLDDTRSMNGASSSVEEIHSLRARLEDLTWRNKRLESELERKSKQLKQVKSLAADEAEKCKSAKELKDMAERSPHAEQAS SSRSSHELPPGASELSQEIEPNGNSADNHIHMLTYGPKNQSEKLQHVVQAEPGVFITLSSLPTGGNELKRVRFSRKYFLEDEAERWWEEKGTKFCERYNI DTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	0	1
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	5.7	0.7648
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	6.2	0.7687
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	9.3	0.7662
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	14.5	0.7618
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	16.2	0.7974
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	17.5	0.7543
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	17.9	0.7556
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	19.2	0.7459
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	25.5	0.7581
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10036377 [exp]	26.8	0.7291

Compare expression of checked genes

Lus10036737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.