Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48850 705 / 0 EMB1144 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037189 [exp] 839 / 0 AT1G48850 738 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221600 [exp] 719 / 0 AT1G48850 733 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3) Potri.008G040700 [exp] 715 / 0 AT1G48850 672 / 0.0 embryo defective 1144, chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01264 [flax] [poplar] Chorismate_synt Chorismate synthase
Representative CDS sequence Show only first row Show all	>Lus10036738 pacid=23171241 polypeptide=Lus10036738 locus=Lus10036738.g ID=Lus10036738.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTTCTTCTTCTCTCGCTTCTAAGCAGTTCCTCGCCTCTTCCAAATTCGATGGCCTCTCTTCCTCTGATCTCCGCAAGCTCTCCCTCCCAG CAGTTCAAATCTCCATCCGCCCTCGCACACGGAGGACCTTCCAAATAAATGCTGCCGGGAGTTCATATGGCAATCACTTCCGCGTTACCACATTTGGGGA ATCTCATGGTGGTGGTGTTGGATGTATTATTGATGGATGCCCTCCGAGACTACCCCTCGCGGAAGCTGATATGCAAGTAGATCTTGATAGAAGGAGGCCT GGTCAGAGCCGAATTACCACGCCTAGGAAGGAGACTGATACCTGCAAAATATCTTCTGGTGTTGCAGAAGGACATACTACTGCAGGTTTTACTACCGGAA CGCCAATCCATGTGTTCGTACCAAATACTGACCAAAGAGGTCATGATTACAAGGAAATGTCTCAAGCTTATAGGCCTTCTCATGCTGATGCAACTTATGA CATGAAATATGGTGTCAGATCAGTTCAGGGTGGTGGCCGATCTTCTGCAAGAGAAACCATTGGAAGAGTTGCAGCTGGAGCTGTTGCGAAAAAGATTCTA AAGCAGTTTGCTGGCACGGAGGTTCTTGCATACGTTTCTCAAGTGCACAAAGTTGTTCTTCCCGAGGATGTGGTTGATCATGAATTGTTGACACTTGACC AGATAGAGAGCAATATTGTGAGGTGTCCAGATCCTGAGTATGCAGAGAAGATGATTAATGCTATTGACACCGTCCGTGTGAAAGGAGATTCAGTTGGTGG AGTTGTAACTTGTATTGTGAGGAATGCGCCACGTGGGCTTGGTTCGCCGGTGTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTGCCATGTCGCTACCT GCAACGAAAGGTTTTGAATTTGGAAGCGGGTTTGCAGGTACATATCTAACCGGTAGTGAACATAATGATGAGTTCTACATGGCTGAAGACGGTCAAATAA GGACGCGAACAAACCGTTCTGGTGGGATACAGGGAGGAATATCAAATGGTGAAATCATACACATGAGAATAGGTTTCAAGCCAACATCAACCATTACCAA GAAGCAAAACACAGTGACAAGAGATAAACATGAGACGGAGCTAATAGCTCGCGGTCGTCATGATCCATGTGTAGTCCCACGAGCGGTTCCAATGGTGGAA GCAATGGTGGCACTGGTGCTAGTGGATCAGCTAATGGCACAATTTGCCCAAAACTACATATTCCCAATCAATCAGGAACTACAAGAACCCTTTGGAACAA AGCTAGAGCCTGCCAATGTCTGA
AA sequence Show only first row Show all	>Lus10036738 pacid=23171241 polypeptide=Lus10036738 locus=Lus10036738.g ID=Lus10036738.BGIv1.0 annot-version=v1.0 MASASSSLASKQFLASSKFDGLSSSDLRKLSLPAVQISIRPRTRRTFQINAAGSSYGNHFRVTTFGESHGGGVGCIIDGCPPRLPLAEADMQVDLDRRRP GQSRITTPRKETDTCKISSGVAEGHTTAGFTTGTPIHVFVPNTDQRGHDYKEMSQAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAAGAVAKKIL KQFAGTEVLAYVSQVHKVVLPEDVVDHELLTLDQIESNIVRCPDPEYAEKMINAIDTVRVKGDSVGGVVTCIVRNAPRGLGSPVFDKLEAELAKAAMSLP ATKGFEFGSGFAGTYLTGSEHNDEFYMAEDGQIRTRTNRSGGIQGGISNGEIIHMRIGFKPTSTITKKQNTVTRDKHETELIARGRHDPCVVPRAVPMVE AMVALVLVDQLMAQFAQNYIFPINQELQEPFGTKLEPANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	1.4	0.9727
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	2.4	0.9551
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	2.8	0.9450
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	3.5	0.9536
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	4.6	0.9488
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	5.5	0.9488
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	5.7	0.9505
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	7.7	0.9231
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	7.9	0.9435
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	8.0	0.9289

Compare expression of checked genes

Lus10036738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.