Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26830 1335 / 0 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 1324 / 0 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 518 / 6e-174 CUL4, ATCUL4 cullin4 (.1) AT4G02570 434 / 3e-142 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 396 / 2e-127 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 365 / 5e-116 Cullin family protein (.1) AT1G59790 129 / 2e-32 Cullin family protein (.1) AT1G59800 103 / 2e-24 Cullin family protein (.1) AT4G12100 74 / 2e-13 Cullin family protein (.1) AT3G46910 66 / 2e-11 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037188 [exp] 1502 / 0 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 1447 / 0 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 1446 / 0 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 445 / 2e-147 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10032200 [exp] 430 / 2e-140 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 429 / 7e-140 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 416 / 6e-135 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 413 / 8e-134 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10038504 [exp] 382 / 6e-124 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093200 [exp] 1421 / 0 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 1416 / 0 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 521 / 9e-175 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 510 / 2e-170 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217300 [exp] 433 / 2e-141 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 431 / 5e-141 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 429 / 3e-140 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 421 / 6e-137 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 70 / 4e-14 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217700 [exp] 63 / 2e-10 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10036739 pacid=23171340 polypeptide=Lus10036739 locus=Lus10036739.g ID=Lus10036739.BGIv1.0 annot-version=v1.0 ATGAGTAACCAGAAGAAGAGGAACTTCCAGATAGAGGCGTTCAAGCACCGTGTGGTGGTGGATCCGAAATACGCAGATAAGACCTGGAAGGTCCTTGAAC ATGCTATCCACGAGATTTACAACCACAACGCTAGCGGTCTCAGCTTCGAAGAGCTCTACAGGAATGCTTACAATATGGTTCTGCACAAATTCGGCGAGAA GTTGTACTCTGGCCTGGTTTCAACAATGACTTCTCATCTAAAGGAGATATCTAAATCCATCGAGGCTGCCCAAGGAGAATCCTTTTTGGAGGAGCTCAAT AGGAAATGGAACGATCACAACAAAGCACTGCAGATGATTAGAGACATACTCATGTACATGGATAGAACTTACATTCCCAGTACTCATAAGACGCCCGTTC ATGAGCTTGGCCTCAACCTGTGGAGAGACAATATTATTCACTCCAGCAAAATCCAGGCCAGGCTATTGAACACACTACTCGGATTAATCGACAGAGAGCG AACTGGTGAAGTCATAGACCGTGGCCTAATGAGAAACATAATCAAGATGCTGATGGATTTAGGCTCTGCAGTTTACCAGGAAGACTTCGAGAAGCATTTT CTCGAAATTTCTGCCGAGTTTTACAAGGTTGAGTCTCAGAAGTTCATTGAATGCTGCGATTGCGGTGAGTATTTAAAGAAAGCTGAGAAACGTTTGAACG AAGAGATAGAGAGGGTGGCACATTACTTGGATGCCAAGAGTGAGATCAAGATAACTAATGTGGTGGAGAGGGAGATGATTGCCAACCATATGTTGAGACT TGTCCACATGGAGAATTCAGGTTTGGTCAACATGCTTCTTGACGACAAATATGACGATCTGGGAAGAATGTACAACTTATTCCGCCGGGTACCCACTGGT CTGTTAACAATCCGGGATGTAATGACTTCTCATCTCAGAGAAACCGGAAAGCAACTCGTTACCGATCCGGAAAGGTTGAAAGATCCAGTCGAGTTCGTGC AACGTTTGTTAGACGAAAAGGACAAATACGACGCCATCATCAACAAGGCCTTCGGTAATGACAAGACATTCCAGAACGCTTTAACCAACTCCTTCGAATA TTTCATCAATTTGAACGCACGATCCCCGGAATATATCTCACTCTACGTAGATGACAAACTGCGGAAGGGACTGAAGGGAGTTAGTGAAGAAGACGTCGAG CTTATCCTCGACAAGGTGATGATGCTGTTCCGATACTTGCAGGAGAAGGATGTATTCGAAAAGTATTACAAACAGCACTTAGCTAAGAGGCTTTTGTCAG GGAAATCAGTATCGGACGATGCAGAAAGAAGCCTAATAGTCAAACTCAAAACCGAATGCGGCTATCAGTTCACTTCGAAGTTGGAAGGTATGTTTACAGA CATGAAGACTTCTCAGGATACAATGCATGGATTCTACGCAAGCCACCCCGAGCTTGGAGATGGTCCTACACTCATCGTTCAAGTTTTAACGACCGGGTCT TGGCCCACACAGCCGAGCGCCACCTGTAACTTGCCTTCCGAAATGTCGGCACTCTGCGAGAAGTTCCGGTCATACTACCTCGGGACTCATACCGGTCGTA GATTATCATGGCAGACTAACATGGGCAATGCTGACATCAAAGCAACTTTTGGGAAAGGTCAGAAGCACGAGCTGAATGTTTCGACCTACCAAATGTGTGT TCTCATGCTTTTCAACAACGCCGATCGTTTAAGCTACAAGGAGATCGAGCAGGACACCGAGATTCCTGCTCCCGAGTTGAAACGGTGCTTGCAGTCCATG GCTTGCGTGAAAGGGAAGAACGTTCTGCGGAAAGAGCCGATGAGCAAGGACATCGGGGAGGAAGATGTGTTTTTCGTCAACGAGAAATTCGCAAGTAAAT TCTACAAGGTGAAGATCGGGACGGTGGTTGCACAGAAGGAGTCCGAGCCGGAGAAGCAAGAGACGCGCCAGAGAGTTGAGGAGGACCGGAAGCCTCAGAT CGAAGCCGCCATCGTTAGGATCATGAAATCAAGAAGGGTGTTGGATCATAATAACTTAATCAGCGAGGTGACGAAGCAACTGCAGCAACGGTTCCTCCCG AACCCTACGGAGATTAAGAAGCGGATCGAGTCACTTATAGAGCGGGACTTCTTGGAGCGGGATAATGTCGACAGAAAACTGTACCGGTATCTCGCATAG
AA sequence Show only first row Show all	>Lus10036739 pacid=23171340 polypeptide=Lus10036739 locus=Lus10036739.g ID=Lus10036739.BGIv1.0 annot-version=v1.0 MSNQKKRNFQIEAFKHRVVVDPKYADKTWKVLEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTSHLKEISKSIEAAQGESFLEELN RKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIIHSSKIQARLLNTLLGLIDRERTGEVIDRGLMRNIIKMLMDLGSAVYQEDFEKHF LEISAEFYKVESQKFIECCDCGEYLKKAEKRLNEEIERVAHYLDAKSEIKITNVVEREMIANHMLRLVHMENSGLVNMLLDDKYDDLGRMYNLFRRVPTG LLTIRDVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDAIINKAFGNDKTFQNALTNSFEYFINLNARSPEYISLYVDDKLRKGLKGVSEEDVE LILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKSVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHGFYASHPELGDGPTLIVQVLTTGS WPTQPSATCNLPSEMSALCEKFRSYYLGTHTGRRLSWQTNMGNADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQDTEIPAPELKRCLQSM ACVKGKNVLRKEPMSKDIGEEDVFFVNEKFASKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNLISEVTKQLQQRFLP NPTEIKKRIESLIERDFLERDNVDRKLYRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	0	1
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	1.7	0.8892
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	4.5	0.8528
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	6.2	0.8798
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	6.5	0.8817
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	7.2	0.8760
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	9.2	0.8755
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	9.5	0.8674
AT3G58050			unknown protein		Lus10021073 [exp]	11.7	0.8657
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	12.7	0.7986
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	13.6	0.8747

Compare expression of checked genes

Lus10036739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.