Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14310 306 / 1e-105 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G41250 159 / 2e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G44730 48 / 1e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037187 [exp] 442 / 3e-159 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10039005 [exp] 178 / 8e-55 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010452 [exp] 178 / 1e-54 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027299 [exp] 178 / 1e-54 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015451 [exp] 56 / 4e-09 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093900 [exp] 330 / 4e-115 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 164 / 1e-49 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G037600 [exp] 164 / 1e-49 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G154500 [exp] 44 / 3e-05 AT5G44730 422 / 3e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10036740 pacid=23171016 polypeptide=Lus10036740 locus=Lus10036740.g ID=Lus10036740.BGIv1.0 annot-version=v1.0 ATGGAAGCTTGCTTGACGAAATGCTCCAACGGGATTACCCTTTCGAGATCTCTGAGAAAGCTTACGAACCCAGGTCGTCGCTCTTCCGTTCCGATCCACT CCGGAACCCAGTCGGCGGCGAAAGCGTACGATGCATTACTGCTGGACGCCGGCGGAACCCTTCTGCAGTTAGCCAAACCCGTCGAGGAAATCTACGCTTC CATCGGCACGAAATACGGTTTAACTGCAACTCCGGCTGAGATAAAGCAAGGTTTCCGGAGGGCCTTTGCTACTCCGTCTTGGCCCGAGAAGCTCCGTTAT CAGGGAGATGGGAGGCCGTTTTGGAAGCTGGTTGTTTCTGAAGCTACTGGTTCTGCCAACCTTGATTACTTCGAAGAAGTCTATGAGTACTACGCAAATG GGGATGCTTGGAGGCTACCAGTTGGGGCTTACAACACCATTTCTCTTCTCAGAGATGCTGGAGTGAAAGTCGCTGTCGTTTCGAATTTCGACACCCGGCT TAGGAAGCTGTTCAAGGACTTGGACATCTCGTATCTGTTCGACGCTGTGATTATCTCGTCTGAGGTAGGATACGAGAAGCCCGATTCGAAGATATTCCAT GCTGCACTAGATGAAGTGAATGTGGAGCCTGGTAGAGCTGTGCACGTTGGAGACGATATCGAGGCAGACAAGAACGGAGCCAATGCCATCGGGATGGATT GCTGGTTGTGGGGAACGGATGTCAAGACCTTCACCGACATACAAAACCGCATCCTGACAGTATAA
AA sequence Show only first row Show all	>Lus10036740 pacid=23171016 polypeptide=Lus10036740 locus=Lus10036740.g ID=Lus10036740.BGIv1.0 annot-version=v1.0 MEACLTKCSNGITLSRSLRKLTNPGRRSSVPIHSGTQSAAKAYDALLLDAGGTLLQLAKPVEEIYASIGTKYGLTATPAEIKQGFRRAFATPSWPEKLRY QGDGRPFWKLVVSEATGSANLDYFEEVYEYYANGDAWRLPVGAYNTISLLRDAGVKVAVVSNFDTRLRKLFKDLDISYLFDAVIISSEVGYEKPDSKIFH AALDEVNVEPGRAVHVGDDIEADKNGANAIGMDCWLWGTDVKTFTDIQNRILTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	0	1
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	2.4	0.7650
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	5.2	0.7861
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	8.7	0.7709
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	11.5	0.7450
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	11.8	0.7590
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	13.2	0.7031
AT3G27100			unknown protein		Lus10041556 [exp]	20.7	0.7590
AT5G66090			unknown protein		Lus10028414 [exp]	20.8	0.7399
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	22.0	0.7115
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10001582 [exp]	22.1	0.7401

Compare expression of checked genes

Lus10036740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.