Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02910 541 / 0 Protein of unknown function (DUF616) (.1) AT1G34550 464 / 1e-157 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 449 / 6e-152 Protein of unknown function (DUF616) (.1) AT1G53040 292 / 6e-93 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 287 / 8e-91 Protein of unknown function (DUF616) (.1) AT5G42660 246 / 3e-76 Protein of unknown function (DUF616) (.1) AT4G38500 236 / 4e-72 Protein of unknown function (DUF616) (.1) AT5G46220 159 / 2e-43 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037186 [exp] 887 / 0 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 464 / 3e-158 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 461 / 4e-157 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 294 / 3e-93 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 293 / 2e-92 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 278 / 5e-87 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 253 / 1e-78 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 251 / 8e-78 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 236 / 3e-72 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094000 [exp] 560 / 0 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 457 / 8e-155 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 455 / 3e-154 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 289 / 3e-91 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 286 / 2e-90 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 280 / 3e-88 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.001G399800 [exp] 276 / 6e-87 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 252 / 6e-78 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 248 / 2e-76 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 244 / 3e-75 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10036741 pacid=23171144 polypeptide=Lus10036741 locus=Lus10036741.g ID=Lus10036741.BGIv1.0 annot-version=v1.0 ATGGCGGTTTACAAGGTGAACGTGGAGCTCCCGCCGGATAGGAGGAATAATTTGAACTCGCCGGGCCGATTTGTCCGGAGAGGGAAGAGGATCGGCAGGT TTCTCCGGCGGCCCATCTATTGGGTTTGGATTTTGCTGCTATCTGCTCTCTGCTTGGTGTTCACCGGTCTTTTTGGGCTTAGATTTCTCTTCCCTGTTCC AGCTAATTCTGATATTCAAGCTGAACGGAAGGTGACGATGGAGATGGAGATTTCCGTCGTCCATGAAGAGCTAGGCGGGAACGCGTCTTCTTCCTCCATC GGCCGACGAAACTTCTCCGGCTCCGGTTACGTCGGGAAACCCAAGCACCGGAAGCAGCATCTTCCTTGCAAAGTTGAGTTTGCCAAGTCGGTGGATTATA TGATGGAACCGAATTCAGTGACGAATTTCACACAGTTTTCGTTAGGGTATGTGAACAAGGAGGAAATGAATTCCACCAGCTCAGGATTTGGTGGCCATCA GACCATGAAGCAAAGGGAGGATTCATTTCATGCCATGAATCAAACGGTTCATTGTGGATTTGTGAATGGAGGATCTCTCGACACTACTCCCGGTTTCGAT CTGGACGAGAAGGACAAGGCATTCATGAGCAAATGTCGAGTCGCTGTTTCGTCTTGCATATTCGGCAGCTCTGATTTCCTCAGGAGGCCTGCTAGCAAGA ATATGAGCGAATTCTCCAAGGAGAATGTATGTTTTGTGATGTTTGTGGATGATCAAACGCTTGAGAAACTGTCTTCGGAGGGACATAAACCCGATGATAG AGGATATGTTGGTTTGTGGAAACTAGTAGTTGTTAACAACTTGCCGTATTCAGACATGAGGAGAACTGGAAAGGTGCCGAAATTTTTGTCACATCGCCTC TTCCCTTCTTCTCGCTATTCTATTTGGGTCGACAGTAAGTTACGACTTGTGATTGATCCGATGCTCATCATTGAACGATTTCTATGGCGAACGAGATCCG AGTTTGCCATTTCGAAGCATTACGATCGTCAGTGTGTCTGGGAGGAGGTACTCCAGAATAAGCGCTTAAACAAGTATCGCCATAGTGAGATCGATAGACA GTTTTATTTTTACCGGGCAGATGGTCTCACTAAGTTCGATCCTTCAGACCCGTATACTCCTCTCCCGAGTTATGTGCCTGAAGGTTCATTCATCGTCCGA GCTCACACGCCGATGTCTAATTTATTCTCCTGTCTGTGGTTCAACGAGGTTGACCGGTTCACTTCACGAGATCAACTCAGCTTTGCATACACGTACTTGA AACTCCGGAGATCCAATCCAGATAAACCTTTTTATCTCAAAATGTTTGAGGATTGTGAGCGAAGAACTCTAGCAAAGCTATTCCGGCATAGAGTGCTACG ACCACCACCTACAATTGGTCCTTGA
AA sequence Show only first row Show all	>Lus10036741 pacid=23171144 polypeptide=Lus10036741 locus=Lus10036741.g ID=Lus10036741.BGIv1.0 annot-version=v1.0 MAVYKVNVELPPDRRNNLNSPGRFVRRGKRIGRFLRRPIYWVWILLLSALCLVFTGLFGLRFLFPVPANSDIQAERKVTMEMEISVVHEELGGNASSSSI GRRNFSGSGYVGKPKHRKQHLPCKVEFAKSVDYMMEPNSVTNFTQFSLGYVNKEEMNSTSSGFGGHQTMKQREDSFHAMNQTVHCGFVNGGSLDTTPGFD LDEKDKAFMSKCRVAVSSCIFGSSDFLRRPASKNMSEFSKENVCFVMFVDDQTLEKLSSEGHKPDDRGYVGLWKLVVVNNLPYSDMRRTGKVPKFLSHRL FPSSRYSIWVDSKLRLVIDPMLIIERFLWRTRSEFAISKHYDRQCVWEEVLQNKRLNKYRHSEIDRQFYFYRADGLTKFDPSDPYTPLPSYVPEGSFIVR AHTPMSNLFSCLWFNEVDRFTSRDQLSFAYTYLKLRRSNPDKPFYLKMFEDCERRTLAKLFRHRVLRPPPTIGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	3.0	0.8815
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	4.0	0.8806
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009244 [exp]	5.3	0.8953
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	5.7	0.8669
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	7.1	0.8651
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	7.2	0.8450
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	8.4	0.8954
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	9.2	0.8715
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	13.4	0.8618
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	14.3	0.8718

Compare expression of checked genes

Lus10036741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.