Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14300 471 / 3e-168 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037185 [exp] 598 / 0 AT1G14300 464 / 3e-164 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124050 [exp] 524 / 0 AT1G14300 462 / 2e-164 ARM repeat superfamily protein (.1.2) Potri.019G092000 [exp] 511 / 0 AT1G14300 449 / 2e-159 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04064 [flax] [poplar] DUF384 Domain of unknown function (DUF384) PF04063 [flax] [poplar] DUF383 Domain of unknown function (DUF383)
Representative CDS sequence Show only first row Show all	>Lus10036742 pacid=23171050 polypeptide=Lus10036742 locus=Lus10036742.g ID=Lus10036742.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGCTCGAAGAACTAATTGGGTTCCTTTCCTCACCTTCTCCACCAGTGAAGAAGGCAGCTGTTGATATTGTTCGGGACTTAACCGGGTCCG AAGATGGATTGATGTCCCTCTCCAGACATGCGAAAATTGTGCTTCCTTCACTGTCTCGGCTCTTAAGTGAGAAAAAGGAGGTTTCCGAGCCAGCAGCGGA AGCTCTCGTCAATCTGAGTGGAAACTCGAATTTGAGTGTAAAGATGGTCGATATGGGGATGATTAAAACGGCTATGGATCTGTTGTATAGACCTGAATCT ACCATTACTCGATTGCTGGTGATGCTCTTGGTGAACCTCACTCAGTTGGATGCCGGTATTTCCTCCCTGCTTCAGACTGATGACGAGAAGATGCAAGGGT TGCACGTAATGAAGCTTGTCAGATCGTACTCCAGATCCTCAAATGACAATAAAGATGATCCATTTGACCATGTCGGTTCAATTCTCGTAAACATCTCACA GAAAGAAGCTGGGAGAAAAATGTTGATGGATCCGAAGCGAGGACTGCTGAAGCAGGTTCTCAGGCAGTTCGATTCCACTAGTCCACTGCGCAAGAAAGGG GTATTTGGAACGATTCATAACTGCTGTTTCGACGCGGAAAATCAACTCCAGCATTTGCTTTTGATGTCGGAGTTTCTCTGGCCAGCTCTGCTACTACCTG TTGCTGGTAACAAGATATACAGCAAAGAAGACGTTTCGAAAATGCCTCCGGAGCTTTCCAGTGCGCTCTCGATTGAACGTGAACCGTGGGATGATCCGGA CATCCGAGTACAAGCACTGGAGGCCATTTACTTTGTTATCATGCAGGAGACGGGTCTAAGAAGCTTTTGGTCTGTCAATGGACCGAGGATACTGCAGATT GGGTATGAAGACGAGGCGGATCCTAGAGTGATTGAAGCGTATGAGCGAGCTGGCTCCTGGCTTGTGCAGCATTCCATTGGAGACGATCCGAGTGACAATC CAAATTAG
AA sequence Show only first row Show all	>Lus10036742 pacid=23171050 polypeptide=Lus10036742 locus=Lus10036742.g ID=Lus10036742.BGIv1.0 annot-version=v1.0 MATELEELIGFLSSPSPPVKKAAVDIVRDLTGSEDGLMSLSRHAKIVLPSLSRLLSEKKEVSEPAAEALVNLSGNSNLSVKMVDMGMIKTAMDLLYRPES TITRLLVMLLVNLTQLDAGISSLLQTDDEKMQGLHVMKLVRSYSRSSNDNKDDPFDHVGSILVNISQKEAGRKMLMDPKRGLLKQVLRQFDSTSPLRKKG VFGTIHNCCFDAENQLQHLLLMSEFLWPALLLPVAGNKIYSKEDVSKMPPELSSALSIEREPWDDPDIRVQALEAIYFVIMQETGLRSFWSVNGPRILQI GYEDEADPRVIEAYERAGSWLVQHSIGDDPSDNPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	0	1
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	3.2	0.8724
AT1G17030			unknown protein		Lus10024442 [exp]	3.3	0.8485
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10020627 [exp]	5.3	0.8623
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	6.0	0.8455
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	9.2	0.8565
AT5G49210			unknown protein		Lus10037138 [exp]	10.6	0.8544
					Lus10007667 [exp]	15.5	0.8488
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	15.6	0.7798
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	18.3	0.8569
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	21.3	0.7579

Compare expression of checked genes

Lus10036742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.