Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26840 342 / 1e-118 ORC6, ATORC6 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037184 [exp] 500 / 0 AT1G26840 373 / 7e-131 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G083700 [exp] 382 / 1e-134 AT1G26840 370 / 7e-130 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05460 [flax] [poplar] ORC6 Origin recognition complex subunit 6 (ORC6)
Representative CDS sequence Show only first row Show all	>Lus10036743 pacid=23171264 polypeptide=Lus10036743 locus=Lus10036743.g ID=Lus10036743.BGIv1.0 annot-version=v1.0 ATGGACATCTCCCAGATTGCAAAGCGACTAGGTCTCTCAGACTCCAAGCAACTTGTCCGGAAAGCCGCCGAGATCCGCCGCCTCTGCGACGTCCAGTTCG ACTCCTCCGTCATCGGAGTGGGAGAGGTTTGTAAAGCTGTGATGTGCTTGGAGATTGCCGCCACTAGGTTTCAGGTGATATTCGATCGAAAAATAGCGAT GAAGTTGAGCGGAATGTCGGAGAAGGCTTATACCAGATCGTTCAACTTACTACAGAATAGCATTGGTATCAAGAATAAGCTGGATGTTCGAGCCTTGGCG ATTCAGTTCGGATGCATCCGAATCATTCCTTACGTGCAGAAGGGTTTATCACTGTTCAAGGATCGGTTTCTAGCATCATTGCCGGTTTCGAGACGAGCAA GTGCTGACTTCACTAGGCCAGTCTTCACTGCTGTCTCGTTCTATCTATCGGCAAAGAAGCAGAAGCTCAAGATAGACAAAGATAAGTTGATCGAAGTCTG TGGCACATCTGAATCCGAATTCCTATCAGTTGCTAATTCTATGAAAGATATATGCTTTGATGTGTTTGGGGTCTCGAAGGATAAGACTGATCCAAAGGAG GTGAAGGGAAACCGAGATTTGCTTGATGTCTTACCTGAGAAAAGAACCGTGGAGGATGGCGGGTATTCATCCGATGATGGAGCACATATTTCCAGTTACA ACAAGCGGAAGAGAAACGAGAAGCAAGGGTATGAGAAGTGGAAATCTACTGTGTTAGCATCTAATAAGAACAGCTCAAAAGAATCGTGCAAGAAAGCAAG GCAAACAAGCCTCAACAACTTTCTTAGAGAAGTTCCTGCTGATAGCACCACCACCACCACCATCAATCAGCTTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10036743 pacid=23171264 polypeptide=Lus10036743 locus=Lus10036743.g ID=Lus10036743.BGIv1.0 annot-version=v1.0 MDISQIAKRLGLSDSKQLVRKAAEIRRLCDVQFDSSVIGVGEVCKAVMCLEIAATRFQVIFDRKIAMKLSGMSEKAYTRSFNLLQNSIGIKNKLDVRALA IQFGCIRIIPYVQKGLSLFKDRFLASLPVSRRASADFTRPVFTAVSFYLSAKKQKLKIDKDKLIEVCGTSESEFLSVANSMKDICFDVFGVSKDKTDPKE VKGNRDLLDVLPEKRTVEDGGYSSDDGAHISSYNKRKRNEKQGYEKWKSTVLASNKNSSKESCKKARQTSLNNFLREVPADSTTTTTINQLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	0	1
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	2.2	0.9288
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10026219 [exp]	4.9	0.9247
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	5.5	0.9034
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	5.7	0.9257
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	9.9	0.9266
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	11.7	0.9200
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	11.8	0.9187
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	12.2	0.9237
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	15.5	0.9159
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	15.7	0.8841

Compare expression of checked genes

Lus10036743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.