Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69640 402 / 2e-143 SBH1 sphingoid base hydroxylase 1 (.1) AT1G14290 395 / 1e-140 SBH2 sphingoid base hydroxylase 2 (.1) AT2G29390 64 / 3e-12 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT4G12110 62 / 6e-11 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT1G07420 58 / 7e-10 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT4G22753 57 / 3e-09 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G22756 55 / 1e-08 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT5G57800 46 / 1e-05 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037183 [exp] 488 / 2e-177 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10012832 [exp] 454 / 8e-164 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10030481 [exp] 451 / 1e-162 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10028725 [exp] 320 / 5e-111 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10006062 [exp] 314 / 1e-108 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10028717 [exp] 268 / 3e-90 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10036293 [exp] 77 / 4e-18 AT1G14290 53 / 1e-09 sphingoid base hydroxylase 2 (.1) Lus10004324 [exp] 57 / 2e-09 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10040739 [exp] 57 / 2e-09 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 328 / 2e-114 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 312 / 8e-108 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 196 / 4e-64 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.003G116000 [exp] 64 / 8e-12 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 62 / 4e-11 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 60 / 2e-10 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 57 / 3e-09 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.014G069500 [exp] 49 / 2e-06 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.017G116600 [exp] 45 / 1e-05 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 41 / 0.0005 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10036744 pacid=23171258 polypeptide=Lus10036744 locus=Lus10036744.g ID=Lus10036744.BGIv1.0 annot-version=v1.0 ATGGGTGGTTTTCGAATCTCGGACGAATTGCTGGGTACGTTTGTTCCGATTGTGGTTTACTGGGGCTATTCCGGGATATATTGTCTCCTTGGATGGCTAG AGGGTTACAGGCTTCACACCAAGCAGGACGAAGATGAGAAGAATTTGGTCTCTAAATGGACTGTCGTCAAAGGTGTCCTCTGCCAGCAAGTTGTTCAAGC TCTTGTTGCTACCCTCTTGTTCGCGGTTATGGGAGGTGATGACCAAGCTGCAACGGGTCAACGGCATTCCCTAACTGTCTTAGCCATGCAATTCGTCACA GCAATGATGATCCTCGATACATGGCAGTATTTCATGCACAGGTATATGCACCAGAACAAGTTCCTCTACAAACACATCCACTCCCAACACCACCGCCTCG TCGTTCCCTATGCATATGGGGCATTGTACAACCATCCCGTCGAGGGTCTACTTCTCGACACAATCGGCGGAGCCTTGTCCTTCCTGCTCTCCGGTATGTC TCCGAGGGCATCCATTTTCTTCTTCTCGTTCGCGACCATAAAGACGGTGGATGACCACTGTGGGTTGTGGCTTCCCGGGAACCCTTTCCACTTTTTCTTC AAGAACAACACTGCTTATCACGACATCCACCACCAGCTCTACGGCAGCAAGTACAACTTCTCCCAGCCGTTCTTCGTAACGTGGGACAGAATCCTCGGGA CCTACATGCCTTATTCCCTTGAAAAGAGAAGAGGAGGGTTCGAAGCTCGGCCTACTAAAGAATTTAAGGATGATTGA
AA sequence Show only first row Show all	>Lus10036744 pacid=23171258 polypeptide=Lus10036744 locus=Lus10036744.g ID=Lus10036744.BGIv1.0 annot-version=v1.0 MGGFRISDELLGTFVPIVVYWGYSGIYCLLGWLEGYRLHTKQDEDEKNLVSKWTVVKGVLCQQVVQALVATLLFAVMGGDDQAATGQRHSLTVLAMQFVT AMMILDTWQYFMHRYMHQNKFLYKHIHSQHHRLVVPYAYGALYNHPVEGLLLDTIGGALSFLLSGMSPRASIFFFSFATIKTVDDHCGLWLPGNPFHFFF KNNTAYHDIHHQLYGSKYNFSQPFFVTWDRILGTYMPYSLEKRRGGFEARPTKEFKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10036744 [exp]	0	1
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	10.1	0.8368
AT3G15780			unknown protein		Lus10023132 [exp]	12.0	0.8655
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	14.0	0.8757
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	34.1	0.8544
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	38.5	0.8587
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	38.8	0.8132
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	61.3	0.8271
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	67.8	0.8489
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	72.9	0.8181
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	77.2	0.8400

Compare expression of checked genes

Lus10036744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.