Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17070 298 / 8e-102 peptidyl-prolyl cis-trans isomerases (.1) AT1G01940 43 / 3e-05 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037182 [exp] 415 / 2e-149 AT4G17070 306 / 3e-104 peptidyl-prolyl cis-trans isomerases (.1) Lus10009237 [exp] 44 / 3e-05 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150300 [exp] 343 / 8e-120 AT4G17070 475 / 1e-169 peptidyl-prolyl cis-trans isomerases (.1) Potri.003G083900 [exp] 335 / 9e-117 AT4G17070 484 / 3e-173 peptidyl-prolyl cis-trans isomerases (.1) Potri.014G051300 [exp] 299 / 2e-102 AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1) Potri.002G139600 [exp] 288 / 2e-98 AT4G17070 405 / 3e-142 peptidyl-prolyl cis-trans isomerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10036745 pacid=23171224 polypeptide=Lus10036745 locus=Lus10036745.g ID=Lus10036745.BGIv1.0 annot-version=v1.0 ATGCTGAATCAGTGTTGGTTGAAGAAGCAAAAGGATGTTCTGGCACCGGATAAACAAGAAGCTGGTGAGACTACAATGTGGACTTCTGGGATCATATTCG AGAGAGGAGAGGGAGTTGTTGGCTTGGAGACTGAATATGGCACCCTTCACATTCGACTCTTTCCGGACTGTGCACCGCATTCGGTAGCTTACATCCTCGA GTTGCTAAGCTTGCGACACTGTGCCGGCTGCCAGTTTTACCGAGCGGAAGGCAGAGGAGATTCATGGGATTCACAAGGGAATCACATTGCTAATGCTGCG TTTGGGCCTCCGTTCGCATTGATTCAAGGAGTACTTGAAGCGCAAGGAACATCGTTCCGGAATGTCGAGAAGGACGCTTGCCCGATTGTGAGAAGGGGAT CGGTTGCATGGGTCGGCTCCGGGCCGGAATTCTTTATCAGCCTGGCTGATCATTCAGAATGGAAACACGAATACACCGTCTTCGGATCTGTGCTTTTGGA AGACATGGACATTGCTGAGGAGATTGTGAAACTCCCCACGAAACCAGATGTTTGGAACAATATCAACGTCACGGTGCTCGAGAAGGCAGTGCCATTGATG TTCAGGAGAAGCAACAAAATAAGGCACTAG
AA sequence Show only first row Show all	>Lus10036745 pacid=23171224 polypeptide=Lus10036745 locus=Lus10036745.g ID=Lus10036745.BGIv1.0 annot-version=v1.0 MLNQCWLKKQKDVLAPDKQEAGETTMWTSGIIFERGEGVVGLETEYGTLHIRLFPDCAPHSVAYILELLSLRHCAGCQFYRAEGRGDSWDSQGNHIANAA FGPPFALIQGVLEAQGTSFRNVEKDACPIVRRGSVAWVGSGPEFFISLADHSEWKHEYTVFGSVLLEDMDIAEEIVKLPTKPDVWNNINVTVLEKAVPLM FRRSNKIRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	0	1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	3.2	0.8685
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	3.6	0.8909
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	4.5	0.8692
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	4.9	0.8675
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	9.1	0.8738
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	9.5	0.8598
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	13.4	0.8495
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	13.6	0.8570
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	14.5	0.8485
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	20.5	0.8198

Compare expression of checked genes

Lus10036745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.