Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02950 130 / 1e-33 PKS1 phytochrome kinase substrate 1 (.1) AT1G14280 114 / 6e-28 PKS2 phytochrome kinase substrate 2 (.1) AT1G18810 63 / 1e-10 phytochrome kinase substrate-related (.1) AT5G04190 47 / 1e-05 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037181 [exp] 694 / 0 AT1G14280 140 / 2e-37 phytochrome kinase substrate 2 (.1) Lus10030480 [exp] 277 / 7e-90 AT2G02950 120 / 4e-30 phytochrome kinase substrate 1 (.1) Lus10012831 [exp] 275 / 2e-89 AT1G14280 122 / 7e-31 phytochrome kinase substrate 2 (.1) Lus10024228 [exp] 69 / 1e-12 AT2G02950 107 / 2e-25 phytochrome kinase substrate 1 (.1) Lus10023598 [exp] 67 / 6e-12 AT2G02950 106 / 3e-25 phytochrome kinase substrate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062600 [exp] 131 / 8e-34 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036746 pacid=23171140 polypeptide=Lus10036746 locus=Lus10036746.g ID=Lus10036746.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTAGCATCATCATCAGGAATCAGCAGGAACCGTGATGGATCCTTCTCCTCGTACCTCGACAGCTCAGAGGAAGCATCCATTCGTAGGCTCG CGGAGTCGAAAGTTGAAGATGAAGTAGAAGGGGAGATTGGAGTTTTCAGCGCTGAGAAGTACTTCAATGGCCGGATCGATGATGACATCATCACTCCCCG AAGAGTAACCACCCTCTCAGGATCATCCGGGAGAAGCCAACAGCAATGCAAATCCAGAACGCCGAGTTTGAAGTCTGAGTCAAGCTGGAACAGCCGGAGT CAGTTCTTGAAAGGGTCTTTCAGGAACAATTCCTGCCGCAGAAATTCGAGCATGAAAGGCCTGCTTTATGGCCTTACTTTCCGGTGTTATTGCAGCGACA AGGATTCCGTTGATGTCAAGGAGGAAGCAATTGGAGAGATCAGTTTGAGGGGGAATCCGAATTCCAACAGGAATCTGATTTCAGGCAAGGCGAGTCCTGA AGCAGCCTGTCAGGATTTAGATACCTTGAAGAAGAAGAAAGAAGCATGCTTCAGCTTTCCTACCACTCCTGGCACTGTCCTGTCAGAAATTCATGAACCA AACCCTATGTTGATGCAAAAATCGATCGATTTTTTTGGGTTTCCGGTGAACTTGAAAGGTAAGGAACCTGACAATGAGAGCGATACAAGTTCAGATTTAT TTGAGATTGAGAGCGTGACAGGGGGAGTGACTCCATTTCTTGAAAGCCAAGCTTCAGATGTCCTCTCTGGATGCGTCACTCCACTCTACGCTCCGAGTGA AGCGAGCATAGATTGGAGTGTCGTAACTGCCAGCATAGCTGATTTCTCCATAATATCGGACCAAGAAGGGCTCGGTAGGGCACAGAGCCCGAGAAAGGCT AGTACAGTCACAGAGAGGCCATGGAGGCGATCTGGCAGCTTTTTGGGATGCAAGAGTGGTGAATCAATTAAAGTTGCAAATGATGCTAGTATGTACAAGC CAAAACCTGAAGTGGGAACTCCAAAATTCAGAAATTCTGATTCTCTTCCCCGGCCTACGGTTAGAGTCCAAGCTGAGAGGAATCTGACAGGATTGGATCC CAGGTACAGTCAGCATCATCTTGTTTCAAACCTGTCGCGTCCTCATTCGTTCTCACCGCCTAATAGGCATCTTTCGAAGATCAGCCTCCTCGATCTCCAT CGATGA
AA sequence Show only first row Show all	>Lus10036746 pacid=23171140 polypeptide=Lus10036746 locus=Lus10036746.g ID=Lus10036746.BGIv1.0 annot-version=v1.0 MAALASSSGISRNRDGSFSSYLDSSEEASIRRLAESKVEDEVEGEIGVFSAEKYFNGRIDDDIITPRRVTTLSGSSGRSQQQCKSRTPSLKSESSWNSRS QFLKGSFRNNSCRRNSSMKGLLYGLTFRCYCSDKDSVDVKEEAIGEISLRGNPNSNRNLISGKASPEAACQDLDTLKKKKEACFSFPTTPGTVLSEIHEP NPMLMQKSIDFFGFPVNLKGKEPDNESDTSSDLFEIESVTGGVTPFLESQASDVLSGCVTPLYAPSEASIDWSVVTASIADFSIISDQEGLGRAQSPRKA STVTERPWRRSGSFLGCKSGESIKVANDASMYKPKPEVGTPKFRNSDSLPRPTVRVQAERNLTGLDPRYSQHHLVSNLSRPHSFSPPNRHLSKISLLDLH R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	0	1
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	1.0	0.9012
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	2.0	0.8907
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	2.4	0.8801
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	2.8	0.8678
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10037181 [exp]	4.2	0.8322
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	5.0	0.8515
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	7.0	0.8412
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	8.1	0.8239
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	8.8	0.8487
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	9.2	0.8243

Compare expression of checked genes

Lus10036746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.