Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 987 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 858 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 679 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 660 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 642 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 637 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 526 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 473 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 461 / 3e-156 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 461 / 7e-156 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037180 [exp] 1186 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 1096 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 1093 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 906 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 857 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 853 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 688 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 679 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008298 [exp] 667 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147800 [exp] 1019 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 1006 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 914 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 890 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 885 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 676 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 674 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 662 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 652 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 643 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036747 pacid=23171267 polypeptide=Lus10036747 locus=Lus10036747.g ID=Lus10036747.BGIv1.0 annot-version=v1.0 ATGGCGATGAAAAACAATCCAGGTGATAATCGAACCAGGAGTTCTATACAGATATTTATTGTAGCAGGGCTTTGCTGTTTCTTCTACATACTGGGAGCAT GGCAGAAGAGTGGGTTTGGGAAAGCGGATAATCTCGCCATGGAAATTACTAAGAACACCGGGGATTGCAACATCATTTCTAGCTTGAATTTTGAGACTCA CCATGGCGGTGAAGTCGAGTCCAGCAATGATTCGAAGAAGAAAGTGTTCGAGCCTTGCAAACCTCGGTACACCGATTACACGCCTTGCCAGGATCAGAAG CGCGCCATGACCTTCCCTAGGGAGAACATGATATATAGGGAGAGGCATTGCCCGCCCGAGGAAGAGAAGCTGCATTGTCTTATCCCGGCACCCAAGGGTT ACGTGACTCCGTTTCGCTGGCCTAAGAGTCGTGATTATGTCCCTTACGCGAATGCCCCGTACAAGAGCTTGACTGTTGAGAAGGCTATTCAGAATTGGGT TCAGTATGAGGGTAATGTGTTTAGGTTTCCTGGTGGTGGAACTCAGTTCCCACAAGGTGCTGATAAGTACATTGATCAGTTGGCTTCGGTTATACCGATT AAGAACGGGACTGTCAGAACTGCGCTGGATACTGGTTGTGGAGTTGCCAGTTTGGGTGCATATCTATGGAGCAGAAATGTTATTGCCATGTCATTTGCAC CGAGAGACTCTCACGAAGCACAAGTTCAATTCGCTCTCGAAAGAGGTGTACCTGCTGTGATCGGCGTTCTTGGTACAATCAAGTTGCCATATCCATCTAG AGCTTTCGACATGGCTCATTGCTCTCGCTGTCTGATTCCATGGGGTGCTAATGATGGAAAATACCTCATGGAAGTTGACCGAGTGCTTAGACCGGGTGGT TACTGGGTTCTTTCTGGCCCTCCTATCAACTGGAAGGTTAACTACAAAGCATGGCAGCGCCCTAAAGAAGAACTCGAGGAAGAGCAGAGAAAGATCGAAG AGACTGCGAAAATGCTCTGCTGGGACAAGAAGTATGAAAAGGGTGAAATCGCCATCTTTCAGAAGAGAATGAATGGTGATTCATGCCATAGTAGACAAGA TAATACTCAAGTTACCTATTGCAAGGATGCTAATCCTGATGATGTGTGGTACCAGAAAATGGAGGCTTGTGTCACCCCTTATCCTGATGCTACCGGTTCC GAACTTGAGAATTTCCCTGAAAGACTTTATGCTGTTCCGCCAAGAGTCTCTAGTGGTTCTGTTCCCGGAGTTTCTGTCGAGAAATATCTGGAAGACAGTA ACAAATGGAAAAAGCATGTCAAAGCTTATAAAAGCATCAATAGACTTCTGGTCTCTGGAAGGTATAGGAACATAATGGATATGAATGCTGGATTAGGAGG ATTTGCTGCTGCACTTCAGTCTCCGAAATCGTGGGTCATGAACGTCGCGCCCACTATATCCGAGAAAAGTACTTTGGGTGTGATCTACGAGCGAGGATTG ACCGGAATCTATCATGACTGGTGTGAAGCTTTCTCTACGTATCCAAGATCATATGACTTGATTCATGCCAATGGTCTCTTCAGTTTGTACAACAAGAAGT GTAATCTGGAGGACATCCTTCTAGAGATGGACAGAATACTGCGACCAGAAGGTGCAGTTATAATCCGCGATGAAGTTGATGTACTGATCAAGGTGAAGAA GATAACCGGAGGAATGAGATGGGATACCAAAATGATGGACCACGAAGATGGTCCTCTTATCCCCGAGAAAATACTTGTCGCGGTTAAGCAGTACTGGGTT GTTAACTCCACATTCAGCCAGTGA
AA sequence Show only first row Show all	>Lus10036747 pacid=23171267 polypeptide=Lus10036747 locus=Lus10036747.g ID=Lus10036747.BGIv1.0 annot-version=v1.0 MAMKNNPGDNRTRSSIQIFIVAGLCCFFYILGAWQKSGFGKADNLAMEITKNTGDCNIISSLNFETHHGGEVESSNDSKKKVFEPCKPRYTDYTPCQDQK RAMTFPRENMIYRERHCPPEEEKLHCLIPAPKGYVTPFRWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI KNGTVRTALDTGCGVASLGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGANDGKYLMEVDRVLRPGG YWVLSGPPINWKVNYKAWQRPKEELEEEQRKIEETAKMLCWDKKYEKGEIAIFQKRMNGDSCHSRQDNTQVTYCKDANPDDVWYQKMEACVTPYPDATGS ELENFPERLYAVPPRVSSGSVPGVSVEKYLEDSNKWKKHVKAYKSINRLLVSGRYRNIMDMNAGLGGFAAALQSPKSWVMNVAPTISEKSTLGVIYERGL TGIYHDWCEAFSTYPRSYDLIHANGLFSLYNKKCNLEDILLEMDRILRPEGAVIIRDEVDVLIKVKKITGGMRWDTKMMDHEDGPLIPEKILVAVKQYWV VNSTFSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	1.7	0.8781
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	2.0	0.8857
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	3.2	0.8785
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	7.7	0.8309
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	8.1	0.8382
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	9.0	0.8470
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	11.2	0.8559
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	13.0	0.8531
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	13.1	0.8609
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	14.3	0.8548

Compare expression of checked genes

Lus10036747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.