Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14270 399 / 2e-139 CAAX amino terminal protease family protein (.1.2.3.4) AT5G60750 85 / 2e-18 CAAX amino terminal protease family protein (.1) AT2G20725 74 / 1e-14 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037179 [exp] 525 / 0 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10028751 [exp] 91 / 2e-20 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 91 / 3e-20 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10024708 [exp] 90 / 1e-19 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10039818 [exp] 86 / 3e-19 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1) Lus10018585 [exp] 82 / 1e-17 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10032326 [exp] 69 / 8e-13 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1) Lus10014639 [exp] 52 / 2e-08 ND 40 / 6e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147600 [exp] 422 / 1e-148 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.001G097500 [exp] 86 / 1e-18 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1) Potri.003G133800 [exp] 85 / 3e-18 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.019G101100 [exp] 82 / 9e-18 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10036748 pacid=23171176 polypeptide=Lus10036748 locus=Lus10036748.g ID=Lus10036748.BGIv1.0 annot-version=v1.0 ATGGTTTCGGCAATCTTCACTTCTCTAGCTCAGTCCTCTCTGCACAGTCTCTCTGCCTCTTCCAATCCATCATTATCTTCACCCAGAAGTACCCCACTCG GTATTCCCAAGTTCCCTTCTTCCACGAGGCTGAGTGGGTTTGCTAACAGACGGTTACGGCCAATCTGCTTCTTCAATAATGGGAAACAGAAGCCTAACAT CAATCTCGAGCCTCAGAAGAGTGGTTCGGATTGGCAAGTGCTCAAAAGATGGGATGTTCCATGGGAGTGGCCTACTGTTTCATTGACATCACTTGCCTGT GGAATCAGTTTTGTGTTGACAGGGTTCGTGGAAGTGGAGACTTTGCCATTTTTAGGGATTAAATTCGAAGAGCTGAATTTGGATCAGAAAGCTGAACTGC TGTTTCTGGATCAAAGTCTAACAACAGCAGTTGTACTTGGAGTACTCTATAGCATTACAAAGAGCTTTGGACCCCTTCCTGAAGATATCTTTCGCTATGA TTTGAAGGAACCTTTCAATCTACGGAAAGGTTGGCTGTTGTGGGCTGGGATTGGTCTTGGTAGTGCTGTGCTTGCCATTGCTTTGACAGGATTCATCGTC TCTAATTTTCATGGCGAGACTCAAGAACGAGATGCTGATGCTCTTGTTCGGCTTCTCCCACTGATCGGATCTTCAGGCATCAGCACCGGTCTACTGCTAG CAATCACAGGTGTCTTGGCACCAATTTTGGAAGAGAATGTATTTCGAGGATTCTTCATGGTTGCTCTAACAAAGTGGGTTCCAATCCCATTCGCGGTCGT GATTAGTGCAGCAGTGTTTGCTCTAGCACATCTAACTCCTGGACAGTTTCCCCAACTTTTTGTGCTAGGAACTCTGCTTGGATTTTCGTATGCTCAAACG CGCAACCTTCTTACTCCGATCACCATTCATGCTTTCTGGAACTCGGGGGTGATCTTGATTCTCACTTTCCTTCAGCTCCAAGGATATGACATAAAAGAAC TGTTGCAAGCATCCCAATAA
AA sequence Show only first row Show all	>Lus10036748 pacid=23171176 polypeptide=Lus10036748 locus=Lus10036748.g ID=Lus10036748.BGIv1.0 annot-version=v1.0 MVSAIFTSLAQSSLHSLSASSNPSLSSPRSTPLGIPKFPSSTRLSGFANRRLRPICFFNNGKQKPNINLEPQKSGSDWQVLKRWDVPWEWPTVSLTSLAC GISFVLTGFVEVETLPFLGIKFEELNLDQKAELLFLDQSLTTAVVLGVLYSITKSFGPLPEDIFRYDLKEPFNLRKGWLLWAGIGLGSAVLAIALTGFIV SNFHGETQERDADALVRLLPLIGSSGISTGLLLAITGVLAPILEENVFRGFFMVALTKWVPIPFAVVISAAVFALAHLTPGQFPQLFVLGTLLGFSYAQT RNLLTPITIHAFWNSGVILILTFLQLQGYDIKELLQASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	0	1
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	2.4	0.9110
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	3.3	0.9141
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	3.5	0.9089
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	4.9	0.9065
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	7.5	0.9021
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	17.7	0.9072
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	19.1	0.9061
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	19.5	0.8805
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	19.5	0.9066
AT2G40435			unknown protein		Lus10010217 [exp]	21.3	0.8212

Compare expression of checked genes

Lus10036748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.