Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 304 / 2e-99 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 298 / 4e-98 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 229 / 2e-72 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 205 / 2e-62 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 195 / 5e-58 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT2G02450 191 / 2e-56 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G61110 186 / 5e-55 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 182 / 2e-54 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT5G08790 181 / 9e-54 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G27410 182 / 1e-53 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037178 [exp] 759 / 0 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10030478 [exp] 393 / 6e-134 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10015367 [exp] 308 / 5e-102 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 306 / 3e-101 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10031189 [exp] 237 / 4e-74 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 223 / 2e-70 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10030446 [exp] 198 / 3e-60 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10007410 [exp] 197 / 9e-59 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10037156 [exp] 195 / 1e-58 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 328 / 3e-109 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 322 / 8e-107 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G066300 [exp] 231 / 1e-72 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G098000 [exp] 229 / 5e-72 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 229 / 8e-72 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 223 / 2e-69 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 221 / 8e-69 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 218 / 1e-67 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.011G046700 [exp] 201 / 1e-60 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 199 / 7e-60 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10036749 pacid=23171337 polypeptide=Lus10036749 locus=Lus10036749.g ID=Lus10036749.BGIv1.0 annot-version=v1.0 ATGGTGGAGGTAGTTGACAAGATGGAGCAGCAGGAAGTGATGCTTCCGGGGTTCAGGTTCCACCCGACTGACGAAGAGCTTGTCGGGTTCTACCTCAAAA GGAAGATCCACCAACGACCTCTCTCCATCGAGCTCATCAAGCAACTCGACATCTACAAATTCGACCCATGGGACCTCCCAAAAATGGCGACGACGGGGGA GAAAGAATGGTACTTCTTCTGCCCGAGGGACAGGAAGTACAGGAACAGTGCCAGGCCGAACAGGGTGACCGGAGCTGGGTTCTGGAAGGCGACGGGGACT GACCGGCCGATCTACTCGTCGGAAGGGAACAAGTGCATAGGGTTGAAGAAGTCTTTGGTGTTCTACAAAGGAAGAGCTGCCAAAGGGTTCAAGACTGATT GGATGATGCATGAGTTCCGGCTGCCTTCTCTCTCCGACCACCAACACCCTCCTGCCCCGGCCGCCGCCCCCTCCAAGCGTTTTCTCGACAAGACCATCCC TGCCAATGATGCATGGGCGATATGTAGGATATTCAAGAAGACGAACTCGACAGCGCAAAGAACACTCTCGCAGTCTTGGGTGTCGCCGATGGTTCAAGAA GTAGTACACCCAACAACATTCACAAGTGAAGGTGATGATCACTTCAACATGAATAATAGTTCAATAATGATACCACCAACACCACCCATTCATAACTTCA ACTACAGCAACAATAACCACATTACCATAGACCACCACCAAACCCACAACCCCTATTCTTCTCCAAGCTATAGCTACAACCAATACACCAACAACTTGTT ATTATCTCCCACAATGGACCATTTTGGGTCATTGAAACCCATAATCAACAACACCACCAACATCCCATTAGCTCCAAAGCCTTCTTACCTTCACCTCCAA AACTACTACCCTAGCTTCTCCACGATGGGAGATCATCACCACCATGAAGCTAGTGCAAAGTCCACACTTGAACTCTCCTCCATGCTCCTCAACATGGCAT CCTCTCCGTCAATACTTCTTGGAGATTTCAAGCAACAAGGAGGTGGAGGAGGTGGGGGTGATCATGAGAGTGTGAGTAGTGTAGACCAGTTCAGCAGCGG GTCTCAGCAAAGCAATGGCAATGGTGGTGGTGGTGGATTAATCTCTCCATTGATGGATCTTGTGGAGCATAAGAAGGAGCCGACCATGATGATGAAGGGC TCGAGTTTCGCGAACATCGACGCCATCCCTTTCAACTGCTTGGGTGATGGTGGTGGTGGTGGTGCTTGGAAGCAGAACTTGTTGCTTTGGGATAATTATG CCAACTCTTCATCACCATGTCCTAGTAGTGACCAAGTCCCTAGTACTTTCTCCACTACTAAGTGCTACACTTAG
AA sequence Show only first row Show all	>Lus10036749 pacid=23171337 polypeptide=Lus10036749 locus=Lus10036749.g ID=Lus10036749.BGIv1.0 annot-version=v1.0 MVEVVDKMEQQEVMLPGFRFHPTDEELVGFYLKRKIHQRPLSIELIKQLDIYKFDPWDLPKMATTGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGT DRPIYSSEGNKCIGLKKSLVFYKGRAAKGFKTDWMMHEFRLPSLSDHQHPPAPAAAPSKRFLDKTIPANDAWAICRIFKKTNSTAQRTLSQSWVSPMVQE VVHPTTFTSEGDDHFNMNNSSIMIPPTPPIHNFNYSNNNHITIDHHQTHNPYSSPSYSYNQYTNNLLLSPTMDHFGSLKPIINNTTNIPLAPKPSYLHLQ NYYPSFSTMGDHHHHEASAKSTLELSSMLLNMASSPSILLGDFKQQGGGGGGGDHESVSSVDQFSSGSQQSNGNGGGGGLISPLMDLVEHKKEPTMMMKG SSFANIDAIPFNCLGDGGGGGAWKQNLLLWDNYANSSSPCPSSDQVPSTFSTTKCYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	0	1
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	1.0	0.9453
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	3.5	0.9380
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	4.2	0.9429
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10028719 [exp]	5.3	0.9221
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	5.3	0.9365
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	5.5	0.9264
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	6.0	0.9291
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	8.8	0.9334
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	9.2	0.9338
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	9.7	0.8776

Compare expression of checked genes

Lus10036749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.