Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 311 / 1e-97 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 294 / 2e-90 Protein of unknown function (DUF1666) (.1) AT3G20260 128 / 1e-31 Protein of unknown function (DUF1666) (.1) AT1G73850 100 / 7e-22 Protein of unknown function (DUF1666) (.1) AT3G01175 75 / 4e-14 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037176 [exp] 1018 / 0 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10015368 [exp] 308 / 5e-95 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 279 / 3e-84 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10038936 [exp] 105 / 1e-23 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10034809 [exp] 100 / 4e-22 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 99 / 3e-21 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 97 / 3e-21 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126800 [exp] 357 / 4e-113 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G082300 [exp] 350 / 5e-110 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 132 / 2e-32 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 125 / 8e-31 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 117 / 2e-27 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 102 / 2e-22 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10036751 pacid=23171018 polypeptide=Lus10036751 locus=Lus10036751.g ID=Lus10036751.BGIv1.0 annot-version=v1.0 ATGGCTGGATTCATGGAAGAGCCGAGGATTTTGAAGTTTACGATCTGTGAAGCTTACTTGGACGAAGAGAAATTGATGAATTTTTCGGAAGGTAAGGATT TTCGAGAGGACGAATTCGATTCGGAGAACGGTTGGGACTTCTTCGATCTTCGGTGGCTGGTTGATTTGAATACGAAATCGAAACCGTCGAAATTGATCAG TGATACTGAGAGCTTGGAGGAGGATGACGAAGAAGACGAAGATATTCGGTTCGGGTTTTCGACGGAGGAAGATGAGGAATTTGCAGGAAACGGACTGGAA TCTGTGGCAGAAACAATTTCTAGTGAAGAGGAATTGATCTCAGAGATTGACGGCTCAGATGATTTGATGAGAAACCCAGAATTAAAAACAGAGGAACCGG AATTAAAAACAGAGGAAGCAGAGGACTCTGATTCTGGCTTAGTGATTGATGAAGAATCTTCAGCTGGAAGACTGTCAGTACAGCGTGACCAAGAAGCTGA ATCACAGAAAGAAAGCTTCGTTTCAACAGAAATTGAAATTCCTCCTCCTGACAATTTCCATTTCTTCTTCCCTTACAGAAAAGTTTACGACGGATCTAAT CCCAAAATTTCCAATGAAGATGAACTAGACGATGAGGAGTTCATAGAAATTGAGCCAGGGAAGCACAATTCAGATTCCTCCTCCAGGTTTGATCAAACCG CTAAGAAGATCGATCTGGTCCAGGAACCAGTTATCAAGAATCGAGAGGAGCCGGTTGAGATGGGATTCGACTCGAGTTATGATGAAGATGATGATAGGGA TGCACTGTGGGAGCATTGTGAGATAGTGGAGCAGTTGAAGATGGAGCTGAGGCAGGCGAGAAACGGAGGATTACCGACGATTCCGGAGGAAGAATCTGAG GCTGAAGAACAACCGGTCGATTCTCCGAAGGTGGTTCTGGAATTGAAGCCATTGAAGATTGCTGAGAAAGTTGGGTATAAAGATCTTGCTGACAGTGTTC AGAAGGTTTACAGGAATTATTCTGACAGGATGAGGAAGCTTGATATCTTGAATTTCCAGACAATGCATGCTGCTGGTCTACTTAATCTGAAGGACACGGT GTTGTTATCGCAGCCATCGAGAAAGTCCTCGATCCCAGCGATGGTGTTGCAGAATCTGTTCAAGCTAGGGAAGTCGTCGGTAGAGCCGATGAGGAAGATT GTGGTGGAAATGCAGCGAGATTTTGAGGTCATATACGTAGGTCAGCTCTGCCTTTCGTGGGAGATACTTCACTGGCAGTTCTGGAAATCTCAAGAGCTGA TGAACTTCGATCATCCTTGTCGCTACAATCAGGTCGCTGGCGAATTCCAGCTGTTCCAAGTTCTGCTTCAACGATTCGTCGAGAACGAGCCTTTCCAAGG ACGTCCTAGGGTTTATAACTACGTTCAGGATCGTTGTGTTGTTCGAAACCTTCTTCAGGTTCCAATGCTCAAAGATGATTGCGTGAAAGACAAGGAAAAG GGAGAGGGAGGCTACGAGCTCGTAATCACTAGCGAAATCCTAGGAGATATCATGGATCAATCGATCCGACTCTTCTGGGATTTCCTTCGAGCCGATAACG AAACCAACCCGCCAGCTCATCTTCATCCCCAAGATGATCCTGTGCACTTGGAGCTCTTCCATGAAATCAGAACAGAGTTTCAGAAGAAGGACAAGAAGCT GAAGGAGATCTTGAAGACAGGGAATTGCTTGCTGAAGAAGTTTCAGAGGAACCAAGGTGCTCAAGAGTGTAGAAAGCAGATGGAAATGGTGGTGGCTCAG GTTGAGCTGAAGCTGGTTTCTAGGGTTCTAAGCATGAACAAAGTGACTACTGAGCAACTGATTTGGTGCCATGAGAAATTAGGGAAGGTTAGTTTGTGTA ACAGGAAAGTTAGTGTTGAACCTTCTTTTGTTCTCTTCCCTTGCTAA
AA sequence Show only first row Show all	>Lus10036751 pacid=23171018 polypeptide=Lus10036751 locus=Lus10036751.g ID=Lus10036751.BGIv1.0 annot-version=v1.0 MAGFMEEPRILKFTICEAYLDEEKLMNFSEGKDFREDEFDSENGWDFFDLRWLVDLNTKSKPSKLISDTESLEEDDEEDEDIRFGFSTEEDEEFAGNGLE SVAETISSEEELISEIDGSDDLMRNPELKTEEPELKTEEAEDSDSGLVIDEESSAGRLSVQRDQEAESQKESFVSTEIEIPPPDNFHFFFPYRKVYDGSN PKISNEDELDDEEFIEIEPGKHNSDSSSRFDQTAKKIDLVQEPVIKNREEPVEMGFDSSYDEDDDRDALWEHCEIVEQLKMELRQARNGGLPTIPEEESE AEEQPVDSPKVVLELKPLKIAEKVGYKDLADSVQKVYRNYSDRMRKLDILNFQTMHAAGLLNLKDTVLLSQPSRKSSIPAMVLQNLFKLGKSSVEPMRKI VVEMQRDFEVIYVGQLCLSWEILHWQFWKSQELMNFDHPCRYNQVAGEFQLFQVLLQRFVENEPFQGRPRVYNYVQDRCVVRNLLQVPMLKDDCVKDKEK GEGGYELVITSEILGDIMDQSIRLFWDFLRADNETNPPAHLHPQDDPVHLELFHEIRTEFQKKDKKLKEILKTGNCLLKKFQRNQGAQECRKQMEMVVAQ VELKLVSRVLSMNKVTTEQLIWCHEKLGKVSLCNRKVSVEPSFVLFPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	2.8	0.9168
AT1G07120			unknown protein		Lus10031863 [exp]	3.7	0.9346
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	4.5	0.8982
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10036842 [exp]	4.9	0.8969
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	5.1	0.9338
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	5.5	0.9174
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	7.5	0.9060
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	7.9	0.8554
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	9.5	0.8899
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	11.0	0.9152

Compare expression of checked genes

Lus10036751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.