Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 169 / 1e-48 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 162 / 3e-46 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 106 / 2e-26 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 97 / 3e-23 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G54510 90 / 1e-20 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G15430 81 / 2e-17 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G11960 76 / 8e-16 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 74 / 3e-15 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 74 / 4e-15 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G32090 74 / 5e-15 early-responsive to dehydration stress protein (ERD4) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004597 [exp] 226 / 1e-69 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 224 / 8e-69 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 199 / 1e-60 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 198 / 2e-59 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10030431 [exp] 110 / 2e-27 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 105 / 4e-26 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10037139 [exp] 100 / 4e-24 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030024 [exp] 81 / 1e-17 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 81 / 1e-17 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113800 [exp] 161 / 1e-45 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.004G115800 [exp] 110 / 7e-28 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.008G091200 [exp] 109 / 2e-27 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 107 / 7e-27 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 86 / 3e-19 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G006000 [exp] 80 / 3e-17 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 78 / 1e-16 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 78 / 2e-16 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 77 / 3e-16 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G005900 [exp] 77 / 5e-16 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10036752 pacid=23171126 polypeptide=Lus10036752 locus=Lus10036752.g ID=Lus10036752.BGIv1.0 annot-version=v1.0 ATGTTTTGTGATCAAGCTTGTCTATCCCGTACAAGCAGCTTTGGCTTCGAAAGATTAGCAATACTTCTCGCTGCATTAGTATTCATGTCTATATTCCTTA TCCCCGTGACATTCGTTCAAGGCTTGACTCAACTGGAAAAGTTATCAAAGACATTTCCTTTCCTAAGAGGGCTTTTGAAGAAGGCCTATATAAGTCGTGT GGTGACAGGTTATCTGCCGAGTGTAATCTTGATGCTATTCTTGCTTCTAGTGCCGCCATTGATGATGCTGTTTTCGAGAATAGAGGCACCAATATCTGGC AGTTTGAGACAAAAGAGTGCATGCTTGAATGTTTTCTTTGTCAATGTCCTCTCGGGGTCAGTTATTAGTCAACTCAATGTTATCTCTTCTATAAGAGACA TACCTCAGGAACTTGCAAGTGTTATACCCACTCAGGCTAGCTTCTTCATGACCTATGTTTTCACATCAGGTTGGGCAGGCTTGGCCTGTGAATTAATGCA AGTTGGTTTGAAAAGGGACTTATCAACTACTTTCTGTCAAGTGTGGCCTATGGGACGTATGGTTGGTGGGTCTGACTGTTACCTTTTTACTGGTATATCT ATGTTTGTTATACTCAATGGGAGTAAACGTCTTGAGAAGTATTTTGTTCTTGGCATCGTCTAG
AA sequence Show only first row Show all	>Lus10036752 pacid=23171126 polypeptide=Lus10036752 locus=Lus10036752.g ID=Lus10036752.BGIv1.0 annot-version=v1.0 MFCDQACLSRTSSFGFERLAILLAALVFMSIFLIPVTFVQGLTQLEKLSKTFPFLRGLLKKAYISRVVTGYLPSVILMLFLLLVPPLMMLFSRIEAPISG SLRQKSACLNVFFVNVLSGSVISQLNVISSIRDIPQELASVIPTQASFFMTYVFTSGWAGLACELMQVGLKRDLSTTFCQVWPMGRMVGGSDCYLFTGIS MFVILNGSKRLEKYFVLGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10036752 [exp]	0	1
					Lus10001546 [exp]	3.9	0.7059
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	8.0	0.6189
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036597 [exp]	30.2	0.5755
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	32.7	0.5904
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	33.7	0.5904
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	34.6	0.5904
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	35.5	0.5904
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	36.4	0.5904
					Lus10013414 [exp]	36.7	0.5691
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	37.2	0.5904

Compare expression of checked genes

Lus10036752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.