Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15210 108 / 1e-28 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT1G69600 99 / 2e-25 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT3G28920 90 / 3e-21 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G60480 86 / 1e-20 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT5G39760 87 / 5e-20 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT2G02540 86 / 1e-19 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT1G14440 80 / 1e-17 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT4G24660 78 / 1e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT1G74660 75 / 1e-17 ZF_HD MIF1 mini zinc finger 1 (.1) AT1G18835 72 / 1e-16 ZF_HD MIF3 mini zinc finger 3, mini zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005242 [exp] 116 / 5e-31 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10033016 [exp] 76 / 9e-18 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10015370 [exp] 75 / 2e-17 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1) Lus10010694 [exp] 78 / 7e-17 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 77 / 2e-16 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10007147 [exp] 74 / 2e-15 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10031315 [exp] 72 / 3e-15 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10026010 [exp] 71 / 1e-14 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 71 / 2e-14 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169400 [exp] 120 / 8e-33 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.008G086000 [exp] 119 / 3e-32 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.004G126500 [exp] 112 / 2e-29 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 109 / 2e-28 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.004G135100 [exp] 83 / 7e-19 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.004G126600 [exp] 78 / 2e-18 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.007G024100 [exp] 82 / 4e-18 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.019G081300 [exp] 80 / 5e-18 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 80 / 7e-18 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 78 / 4e-17 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10036753 pacid=23171115 polypeptide=Lus10036753 locus=Lus10036753.g ID=Lus10036753.BGIv1.0 annot-version=v1.0 ATGGACTTAACCCCAGCAGCTCCCCCAACATCAACAACTTCACCCCTTCCAATCTCATCCTCCATAAACCCATTAATCTCCAAATCTCCTAATTCTCCTT CCGGCACCGATAATAACCCCAACCTCCTCCCCACCCACCTCCACAAGTCCCTCTCTCTCTCCAACGGCGTCCGCCGCCGCCTCCACCACCACCCCCAAGA ACCACCAACAATGGTGGTTTGTTCCTACAAAGAATGCCTCAAGAACCACGCCGCCACCATGGGCGGCCTCGCCTTAGACGGGTGCGGCGAGTTCTTCCCT TCCCCCAATTCCTCCCCTTTAGACCCCACCTCGCTAAAGTGCGCTGCTTGCGGCTGCCACCGCAATTTCCACCGCCGTGAACCCTCTTCCTCCGCCGTCG TCCACCACCACTACCACCCCCTCCCGGCGATTCAGTGGACCAACCACAACAATAACTCGTCCAGCCCAAGCACCAGCCCTAGCCCTAGCTCCCCTGCCGC TTCCCCAACTCCCCACCACTCCATCTACCCTCCTCCACCTCCTTCCTCCGCCCCTCACATGCTCCTCGAACACGCACCCCCCCTAAAGCAAAATGACCCA CCACCCCCCGCCGCCGCCGTACCACAGCGGCGGCGGAGTTGGAGGGCGGAATTCTGA
AA sequence Show only first row Show all	>Lus10036753 pacid=23171115 polypeptide=Lus10036753 locus=Lus10036753.g ID=Lus10036753.BGIv1.0 annot-version=v1.0 MDLTPAAPPTSTTSPLPISSSINPLISKSPNSPSGTDNNPNLLPTHLHKSLSLSNGVRRRLHHHPQEPPTMVVCSYKECLKNHAATMGGLALDGCGEFFP SPNSSPLDPTSLKCAACGCHRNFHRREPSSSAVVHHHYHPLPAIQWTNHNNNSSSPSTSPSPSSPAASPTPHHSIYPPPPPSSAPHMLLEHAPPLKQNDP PPPAAAVPQRRRSWRAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	5.2	0.9491
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10037175 [exp]	5.4	0.9164
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	5.5	0.9366
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	5.5	0.9335
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	7.4	0.9305
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	7.5	0.9318
AT1G61170			unknown protein		Lus10018461 [exp]	10.8	0.9110
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	12.5	0.9173
AT5G45590			Ribosomal protein L35 (.1)		Lus10010406 [exp]	21.4	0.9082
AT3G18800			unknown protein		Lus10033505 [exp]	22.2	0.9113

Compare expression of checked genes

Lus10036753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.