Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 241 / 1e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 238 / 4e-78 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 219 / 2e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 207 / 2e-66 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 110 / 5e-29 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 108 / 6e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 84 / 2e-19 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 82 / 2e-18 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 55 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 54 / 4e-08 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037172 [exp] 357 / 5e-125 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 303 / 9e-104 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 248 / 1e-81 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 248 / 1e-81 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 244 / 2e-80 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 236 / 8e-77 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10030472 [exp] 234 / 3e-76 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 122 / 3e-33 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 119 / 4e-32 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086300 [exp] 315 / 2e-108 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 310 / 2e-106 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.019G111700 [exp] 136 / 9e-39 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 132 / 3e-37 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 132 / 6e-37 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 125 / 1e-34 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 123 / 1e-33 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 116 / 3e-31 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G196600 [exp] 84 / 3e-19 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 84 / 5e-19 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10036754 pacid=23171208 polypeptide=Lus10036754 locus=Lus10036754.g ID=Lus10036754.BGIv1.0 annot-version=v1.0 ATGAGCGATCGCCTCATGACCCCGCCGGCGACGGCGGAGGGAAAACTCGGAAAACTGGAAGTTTGCCCGGCGGCGGAAAAGACCGGTGCTTCTGCTGGTC CGTCGTGTTCTAGGTCGTCGGAAGAAGAGGATGAGCCGTTGATCCAAGGTGGGGAATGCCGGATTTGTCAAGAGGAAGATTCCATTCACAATCTGGAATC TCCTTGTGTATGCAGCGGCAGCCTCAAGTATGCTCATAGGAAATGTGTACAACATTGGTGCAATGAGAAAGGAGACATCACTTGTGAAATTTGCCATAAG CCTTATCAACCAGGGTATACAGCTCCACCTCGTCCCCCTCGCCCTGAAGACACTGTTATCGACATCGGAGGAGGATGGACGATCTCGGGAACACCTATAG ATCTCCGCGACCCTCGTTTACTAGCTATCGCAGAGGCAGAACGCCATTTTCTCGAAGCTGAATACGACGAGTACGCTGCTTCAAATGCCAGCGGAGCTGC ATTTTGCCGCTCTGCTGCTCTAATCTTGATGGCCCTTCTGCTGTTACGACACGCATTGACTGTTACCGATGCTGATTCAGATGATGATGATGTTTCTACC TTCTTCTCTCTATTCTTGCTCCGAGCGGCGGGTTTCCTACTGCCGTGTTACATCATGGCTTGGGCGGTAAGCATCTTGCAAAGAAGAAGGCAGCGGCAAG AAGCTGCAGCATTAGCAGCAACACAAGTGGCGTTCGTGCTGCAATCTGGACAGCGTCGAGGTGTGCATTTCACAATAGCGTCTGGACCAGCTGTAGCTAC GCATCAAGAACCAGTTTAA
AA sequence Show only first row Show all	>Lus10036754 pacid=23171208 polypeptide=Lus10036754 locus=Lus10036754.g ID=Lus10036754.BGIv1.0 annot-version=v1.0 MSDRLMTPPATAEGKLGKLEVCPAAEKTGASAGPSCSRSSEEEDEPLIQGGECRICQEEDSIHNLESPCVCSGSLKYAHRKCVQHWCNEKGDITCEICHK PYQPGYTAPPRPPRPEDTVIDIGGGWTISGTPIDLRDPRLLAIAEAERHFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALTVTDADSDDDDVST FFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATQVAFVLQSGQRRGVHFTIASGPAVATHQEPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10036754 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	2.0	0.9022
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	4.6	0.8783
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10036198 [exp]	5.9	0.8700
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10017908 [exp]	6.9	0.8091
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	8.2	0.8725
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	8.4	0.8812
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	10.9	0.8582
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	13.7	0.8566
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	14.8	0.8321
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	16.8	0.8690

Compare expression of checked genes

Lus10036754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.