Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26810 831 / 0 GALT1 galactosyltransferase1 (.1) AT3G06440 503 / 9e-172 Galactosyltransferase family protein (.1.2) AT1G74800 347 / 1e-110 Galactosyltransferase family protein (.1) AT5G62620 338 / 3e-107 Galactosyltransferase family protein (.1.2) AT1G27120 332 / 8e-105 Galactosyltransferase family protein (.1) AT4G21060 309 / 5e-96 Galactosyltransferase family protein (.1.2) AT3G14960 91 / 2e-19 Galactosyltransferase family protein (.1) AT1G53290 86 / 6e-18 Galactosyltransferase family protein (.1) AT2G26100 86 / 7e-18 Galactosyltransferase family protein (.1) AT1G33430 64 / 9e-11 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012822 [exp] 1139 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 1104 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 1068 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 563 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 482 / 2e-163 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 331 / 2e-104 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 324 / 9e-102 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 323 / 3e-101 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 308 / 1e-95 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168500 [exp] 1017 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 1003 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 594 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 340 / 6e-108 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 340 / 1e-107 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 339 / 6e-107 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 322 / 8e-101 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 307 / 1e-95 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 87 / 5e-18 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 86 / 8e-18 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10036756 pacid=23171054 polypeptide=Lus10036756 locus=Lus10036756.g ID=Lus10036756.BGIv1.0 annot-version=v1.0 ATGTCACTCTGTTGGACAATGAAGAGATGGTATGGAGGAGTTCTGATTGCATCCCTTTTTATGATGTTGCTCTTGAGATATGGCTTCTTGAAGAATCCTA TAGAAGAAGGTTACCTAGCAAACTCCTTCTCCAACGCAACTAAGAATCCTCTTGAATGGATCCAGAATACTTTTCCGCCGGCTCTTCAAAGTCCACAAAA TTCGTCCAAGGCGATTTCTACAAATGCCATAGTCATTAACTTGTTTGCTAGGAGGAATCTTTCTAATGTAGAAAACGTGTCCATGGACACATGGAATCTG TTGGAAGGCTTGGCTAATGGTTCGCAGGCTTTACCAAATGGATTAGATGCCATCAAGGAAGCTGTCAGTGCATGGAATAATCTGATGGCTTCAGTCGAAG AGGAGAAACTTATTTATGCAAATGACAGCTCAAATAGGAGAGCCAAAGAAAAGCAATGTCCTCATTTTCTTAACAAAATGAATGCAACGGTGAATCATGA CAGTGGTTTTAGATTGAGACTCCCTTGTGGGTTGACTCAGGGATCTTCAATTACAATAATTGGGACCCCGGAAGGTCTTCTCGGTAATTTTCATATTGAG TTGACTGGGGAATCGCTGCCAGGGGAGCCTGATCCACCTATCATATATCATTACAATGTGAGGCTAAATGGTGACAAAGTAACTGATGATCCAGTTATAG TTCAGAACACCTGGACTGCAGCTCATGATTGGGGTGGTGAGGAACGCTGTCCATCTCCATCACCTGAGAAGATCAAGAAAGTGGACGAGCTGGAAAAATG CAACAAGGTGGTTGGTAAAAATACTACTCGAATCCATGGAGATGGTTCTAGGAGGTCTGCAATGGTTCAGGATGGATCCAAACTCAGAACATATTTCCCA TTCAAGCAAGGTTATGTATCTGTTATGACCCTCAGAGTAGGATCAGAGGGAATCCAGACGACAGTTGATGGAAAGCATATTACTTCGTTTGCATATCGTG AAACTTTGGAGCCATGGCTTGTGAGTGAAGTTAGGACTTCTGGCGACCTGAAGTTAATATCTGTACTGGCTAGCGGTCTCCCTACAGTTGAGGATTCGGA CCATTCTGTAGATTTAGAAGCACTGAAAGCATCTCCTCTTTCTCATAAACAAACGCTAGATCTCTTCATTGGTGTCTTCTCCAACGCAAACAATTTCAAG CGCAGGATGGCTGTTCGTAGAACATGGATGCAATATGCTGCTGTGCATTCTGGAGCAGTTGCAGTACGGTTTTTCGTTGGTTTGCATAAGAATCAAATAG TAAACGAGGAGCTCTGGAACGAGGCAAGAACATACGGGGACGTACAACTGATGCCTTTTGTTGACTACTACAATCTCATCACTTGGAAAACTTTAGCAAT ATGCATATTTGGAACACAAGTTGCATCTGCAAAATATGTCATGAAGACCGATGACGATGCATTCGTTCGCGTGGATGAAGTCCTCTCTTCACTAAAGAGA GTCAATGTGAACCACGGGCTTCTTTACGGGCTCATCAACGCAGATTCTCAACCGCATCGAAATCCCGATAGCAAGTGGTACATTAGTAATGAGGAATGGA GAGAGAGTAAATACCCACCTTGGGCGCACGGTCCCGGTTATGTCATCTCTCAAGACATAGCAAAGTCAGTTTACAAGAAATTCAAGGAAGGTCATTTGAA GATGTTTAAGCTGGAAGATGTGGCAATGGGGATATGGATCGCTGAAATGAAAAACGAAGGCATGAACGTTCGCTATGAGAAGGAAGAGAGAGTCTGCAAC GAAGGCTGCCGAGATGGCTACATTGTTGCTCACTATCAAACTCCAAGGGAGATGCTGTGTCTCTGGCAGAAGATCCAGGATGGAAATGGAGCCAAATGCT GCCGAGATTGA
AA sequence Show only first row Show all	>Lus10036756 pacid=23171054 polypeptide=Lus10036756 locus=Lus10036756.g ID=Lus10036756.BGIv1.0 annot-version=v1.0 MSLCWTMKRWYGGVLIASLFMMLLLRYGFLKNPIEEGYLANSFSNATKNPLEWIQNTFPPALQSPQNSSKAISTNAIVINLFARRNLSNVENVSMDTWNL LEGLANGSQALPNGLDAIKEAVSAWNNLMASVEEEKLIYANDSSNRRAKEKQCPHFLNKMNATVNHDSGFRLRLPCGLTQGSSITIIGTPEGLLGNFHIE LTGESLPGEPDPPIIYHYNVRLNGDKVTDDPVIVQNTWTAAHDWGGEERCPSPSPEKIKKVDELEKCNKVVGKNTTRIHGDGSRRSAMVQDGSKLRTYFP FKQGYVSVMTLRVGSEGIQTTVDGKHITSFAYRETLEPWLVSEVRTSGDLKLISVLASGLPTVEDSDHSVDLEALKASPLSHKQTLDLFIGVFSNANNFK RRMAVRRTWMQYAAVHSGAVAVRFFVGLHKNQIVNEELWNEARTYGDVQLMPFVDYYNLITWKTLAICIFGTQVASAKYVMKTDDDAFVRVDEVLSSLKR VNVNHGLLYGLINADSQPHRNPDSKWYISNEEWRESKYPPWAHGPGYVISQDIAKSVYKKFKEGHLKMFKLEDVAMGIWIAEMKNEGMNVRYEKEERVCN EGCRDGYIVAHYQTPREMLCLWQKIQDGNGAKCCRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	2.0	0.8571
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	5.7	0.8673
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	6.0	0.8604
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	8.8	0.8690
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008217 [exp]	12.0	0.8296
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10001529 [exp]	13.3	0.8050
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	18.7	0.8363
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	19.7	0.8251
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	22.3	0.7722
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	24.7	0.8459

Compare expression of checked genes

Lus10036756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.