Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39660 186 / 5e-55 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT3G47500 177 / 6e-52 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G62430 163 / 6e-48 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G29160 100 / 2e-25 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 98 / 1e-24 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G69570 99 / 4e-23 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 98 / 8e-23 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 88 / 2e-20 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 89 / 4e-20 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 88 / 6e-20 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037167 [exp] 403 / 2e-140 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10034461 [exp] 201 / 8e-61 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10019093 [exp] 196 / 9e-59 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10020314 [exp] 152 / 6e-43 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10020315 [exp] 148 / 5e-41 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10005677 [exp] 139 / 1e-37 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10013905 [exp] 100 / 1e-25 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 100 / 3e-25 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10007976 [exp] 89 / 3e-20 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167600 [exp] 263 / 4e-84 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 259 / 5e-83 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.004G121800 [exp] 204 / 2e-61 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.017G084600 [exp] 200 / 5e-60 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.019G040700 [exp] 121 / 8e-31 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.013G066700 [exp] 119 / 5e-30 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.011G065900 [exp] 99 / 3e-25 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 96 / 9e-24 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 92 / 5e-21 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.003G034200 [exp] 90 / 9e-21 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10036760 pacid=23171002 polypeptide=Lus10036760 locus=Lus10036760.g ID=Lus10036760.BGIv1.0 annot-version=v1.0 ATGGAGACCAAGTTCTGCTACTACAACAACTACAATGTCAACCAGCCACGCCATTTCTGCAAGAACTGCCAGCGGTATTGGACAGCTGGTGGCACGATGA GGAACGTCCCTGTTGGTGCTGGCAGGCGCAAGAACAAGGCCACTTCATCGACTGCTGTCTCGCAACAGCAGCAGCAGTACAATCAGATCATAGTCTCAGA AGCTCTGAGGTCAGCTCATCACCAGTCACATGTTATGAATGGTGGTGGCACAACCGTGCTTAGTTTCCGGTCCGATTCCCCACTTTGCGAATCGGTGGCT TCGATCTTGAACATCTCTGAGAGTGCACAAGCCGGGTTCCAACCTCGGAGAGGTACAACTGGTAATGTGGATGATTGCTCAGGTGGGTTTTCGGGTTCGA ATTCATCAGACAAGGTAGTCAACAATTGTCAAGGGTTTTCTTGGCCTTTCGCAGTGCCTCCGCCAGGGTTCTGCCCTCCAGGGTACCCAATTTCGTTCTA TCCGGCACCAGTACCGCCACCTTACTGGGGTTGTGCTGCAGTTCCAGCACTCCCTTGGAATGGGGCACAATGTGTGGCCCCCTTAAGCCCGAAGGCAGCC TCAAGCACGAGCTCGAGCCCGGCCACTTCCCCGTTGGGGAAGCATAGTAGGGACGGGGGCGAATTCGCGAGGTCGGACGATGGTGGATTGTCAGAAGAGC CACCGTTGCGAAAGATGAGCAACGGTAGCAGCAGCTCAGATAGAAGGGTTGTGGTTCCCAAGACACTAAGGATTGATGATCCGAATGATGCGGCCAAGAG CTCGATTTGGGCGACATTAGGGATTAGCAACAGTGCAAACCCTAGCTCCAACAAAGGAGGTGACCATATGTTCCAAGGGTTCCAATCAAAGGGCGGGAAT AGAGTCCCAAGGAGTGGGGCATCACTCATGTTGCAGGCTAACCCGGCTGCCATGTCAAGGTCTCTCAACTTCCGCGAGAACAACTGA
AA sequence Show only first row Show all	>Lus10036760 pacid=23171002 polypeptide=Lus10036760 locus=Lus10036760.g ID=Lus10036760.BGIv1.0 annot-version=v1.0 METKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKATSSTAVSQQQQQYNQIIVSEALRSAHHQSHVMNGGGTTVLSFRSDSPLCESVA SILNISESAQAGFQPRRGTTGNVDDCSGGFSGSNSSDKVVNNCQGFSWPFAVPPPGFCPPGYPISFYPAPVPPPYWGCAAVPALPWNGAQCVAPLSPKAA SSTSSSPATSPLGKHSRDGGEFARSDDGGLSEEPPLRKMSNGSSSSDRRVVVPKTLRIDDPNDAAKSSIWATLGISNSANPSSNKGGDHMFQGFQSKGGN RVPRSGASLMLQANPAAMSRSLNFRENN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	0	1
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	1.0	0.9407
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	2.8	0.8236
AT3G12320			unknown protein		Lus10024129 [exp]	4.6	0.7625
AT3G12320			unknown protein		Lus10005384 [exp]	5.9	0.7502
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	6.6	0.7539
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	9.5	0.7197
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	11.0	0.6976
AT3G54500			unknown protein		Lus10024170 [exp]	11.2	0.7070
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020361 [exp]	16.1	0.6871
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	16.1	0.6715

Compare expression of checked genes

Lus10036760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.