Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03060 256 / 4e-82 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G18750 234 / 2e-73 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G69540 226 / 3e-71 MADS AGL94 AGAMOUS-like 94 (.1) AT1G77980 108 / 2e-26 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 98 / 7e-23 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 88 / 1e-19 MADS AGL67 AGAMOUS-like 67 (.1.2) AT2G26320 72 / 2e-15 MADS AGL33 AGAMOUS-like 33 (.1) AT3G57390 73 / 1e-14 MADS AGL18 AGAMOUS-like 18 (.1.2) AT5G13790 69 / 3e-13 MADS AGL15 AGAMOUS-like 15 (.1) AT2G34440 68 / 3e-13 MADS AGL29 AGAMOUS-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037166 [exp] 694 / 0 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10026613 [exp] 496 / 3e-176 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 482 / 3e-171 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10019089 [exp] 269 / 5e-87 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 274 / 4e-86 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10022506 [exp] 107 / 6e-26 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 97 / 1e-22 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 92 / 8e-21 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 77 / 8e-16 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 458 / 3e-161 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 441 / 3e-154 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.007G087500 [exp] 99 / 6e-23 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 97 / 4e-22 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.015G098400 [exp] 72 / 1e-14 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.009G055700 [exp] 73 / 2e-14 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.007G120002 [exp] 69 / 3e-14 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.003G119700 [exp] 71 / 6e-14 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 70 / 7e-14 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.006G048700 [exp] 70 / 2e-13 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10036761 pacid=23171239 polypeptide=Lus10036761 locus=Lus10036761.g ID=Lus10036761.BGIv1.0 annot-version=v1.0 ATGGGAAGGGTTAAGCTGAAGATCAAGAAACTGGAGAACACCAATGGGCGTCAAGCAACGTATGGAAAGAGGAAGCATGGTATGATGAAGAAGGCTAGCG AGTTGGCGATACTATGCGACATTCCCCTTATCCTTCTTATGTTCTCACCAACTGGCAAGCCTGCATTGTGTAAAGGAAAGCGCAGTATTGAAGAAGTTAT GTCGAAATTCGCTCAATTAGCACCACAAGAAAGGACGAAAAGGAAGATGGAAAGTCTCGAAGCATTGAAGAAAACGTTTAAGAAGTTGGATCATGATGTC AACATCCAGGAGTTCTTGGGGACAAGACTTGTCTCACTTTGTGAAACTTCAATTGATCAGGACCTTGAAAACCAGTCGAATCTGTTGAAGAATCAACTTT CCGAAACGTATAAGAGACTGAACTACTGGGAAAACCTCGACAAAGTCGACAGCATTGAATTGTTGGGGCAGATGGAGAATTCCGTCCAGGAGTCGCTTAG TCGAATCCAAGAACATAAGAACAATTTAGGAAAACAGCAAATTGGATCACTAGAGTGCAACAGTCAGTTTCAAGACGAGATGCAGGTACCTTTCGGGATG AATACCGAGCAGCAACAGTTCCCACCTTTTCAATGGCTTTCGAACTGTGACCCCCAGCATATCGTGTTCCCGGATGACCATAATCTCCTCTCTCACAGGG ATGTTGAATGCTCTGCAAGTTCTTCCTGCGGGGGCTATTCTGGATACTTCTACCCCGGAAAAGGCTCTGATCTCTCGAATTCCGGACAAGAAAGTGGCGT AAGCTGTAGTCTGAACGAGTTAAATGGGAATGCATCTTTGAGGATGCAGTTGACCGGGCAGTACCCGTTCTTTCCATACAATCTGAATTTGCTCGATGAC CGAAAGTTCCAGCCAGCAGTGGCAGAGATGAGCCTACTTCAGGAAAGTGCTGTGGATTTCAACGTTAATGGAAGCTTCGAAGCTCCCAAACCTGGCTATT GTAACACTCCTGGTAGTTGGGCTTCTACGTCCGGACCTTGCACTGTCCGCACCATGTTCGACGACCAACTGTATTCCCAGGTTCAACATCTTGTCGAATT CGAGCAATGCTGCGACCCGGTTTATTCGTGTACAACTCACACTTAG
AA sequence Show only first row Show all	>Lus10036761 pacid=23171239 polypeptide=Lus10036761 locus=Lus10036761.g ID=Lus10036761.BGIv1.0 annot-version=v1.0 MGRVKLKIKKLENTNGRQATYGKRKHGMMKKASELAILCDIPLILLMFSPTGKPALCKGKRSIEEVMSKFAQLAPQERTKRKMESLEALKKTFKKLDHDV NIQEFLGTRLVSLCETSIDQDLENQSNLLKNQLSETYKRLNYWENLDKVDSIELLGQMENSVQESLSRIQEHKNNLGKQQIGSLECNSQFQDEMQVPFGM NTEQQQFPPFQWLSNCDPQHIVFPDDHNLLSHRDVECSASSSCGGYSGYFYPGKGSDLSNSGQESGVSCSLNELNGNASLRMQLTGQYPFFPYNLNLLDD RKFQPAVAEMSLLQESAVDFNVNGSFEAPKPGYCNTPGSWASTSGPCTVRTMFDDQLYSQVQHLVEFEQCCDPVYSCTTHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10036761 [exp]	0	1
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	23.0	0.6679
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	41.1	0.6419
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	51.7	0.6373
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	66.2	0.6351
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	77.9	0.6060
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	79.6	0.6061
					Lus10039535 [exp]	132.6	0.5561
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	146.3	0.5774
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	150.4	0.5528
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	182.2	0.5578

Compare expression of checked genes

Lus10036761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.