Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01020 648 / 0 Protein kinase superfamily protein (.1) AT2G05940 456 / 7e-158 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G56460 447 / 3e-155 Protein kinase superfamily protein (.1) AT2G07180 447 / 4e-155 Protein kinase superfamily protein (.1.2) AT5G35580 441 / 1e-151 Protein kinase superfamily protein (.1) AT2G26290 434 / 7e-150 ARSK1 root-specific kinase 1 (.1) AT1G61590 427 / 2e-147 Protein kinase superfamily protein (.1) AT5G15080 421 / 1e-143 Protein kinase superfamily protein (.1) AT3G28690 412 / 5e-142 Protein kinase superfamily protein (.1.2.3) AT3G01300 414 / 3e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037165 [exp] 466 / 8e-160 AT5G01020 428 / 9e-146 Protein kinase superfamily protein (.1) Lus10034897 [exp] 447 / 1e-153 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 442 / 5e-152 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10040588 [exp] 436 / 2e-150 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006643 [exp] 435 / 6e-150 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10030668 [exp] 433 / 2e-148 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 431 / 2e-148 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10033294 [exp] 428 / 2e-148 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 432 / 4e-148 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113600 [exp] 698 / 0 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 698 / 0 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 451 / 2e-156 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 444 / 5e-155 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 447 / 8e-155 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 445 / 2e-154 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 435 / 2e-150 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 436 / 4e-150 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 434 / 4e-150 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 434 / 5e-149 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036762 pacid=23171130 polypeptide=Lus10036762 locus=Lus10036762.g ID=Lus10036762.BGIv1.0 annot-version=v1.0 ATGGGCAACTGCGGCACCAGAGAGGAGTCTGCTGTCGTCGTCGTCGTTCCAACTTCTCAAGCAGCTCAACATCAGCAGTCTTCTTCGTCGTCAGCTGCAG CCGCAACGAAGAGCTTGGAAAGAAAGCCACCTTATCACAACCGATCCATCTCAGATCTAAGCGATCCTTCTTCCACGCCGCGTAGCGTCGACCACTTCGC CGACGGCGGCAAGAACGCACTCCTCCTCTACACCCACGTCATCTCCTTCACTCTCTTCGAGCTCGAGACCATCACCAAGAGCTTCCGTTCCGATTATATC CTCGGAGAAGGCGGATTTGGCACTGTCTACAAAGGCTACATTGATGAGAATGTCCGCGTCGGACTTAGATCTCTCCCCGTCGCCGTCAAGGTTCTCAACA AGGAAGGTCTTCAAGGCCACCGTGAATGGCTTACGGAGGTCAACTTTCTCGGCAAACTTCGACACCCGAATCTGGTCAAATTGATTGGATACTGTTGCGA GGATGATCACCGGTTGCTTGTTTACGAGTTCATGTTCCGTGGGAGCCTTGAGAATCACCTGTTTAGAAAGACAGCAGTTCCGTTATCTTGGGCGACAAGA ATGATGATTGCTCTTGGAGCCGCCAAAGGCCTTGCTTTCTTGCATAACGCGGAGAGGCCAGTTATATACAGAGACTTCAAAACCTCTAATATATTGTTGG ACTCGGATCATACGGCCAAACTGTCTGATTTTGGCCTTGCCAAAGCTGGACCACAAGGTGATGAAACTCATGTATCCACTCGAGTCATGGGGACCTATGG CTACGCTGCCCCGGAATATGTAATGACCGGTCACTTGACTGCAAGAAGTGACGTATACAGCTTTGGGGTCGTTCTTCTGGAACTACTGACGGGGAGGAAG TCGGTGGACAAGACTAGGCCGAGCAGGGAGCAGAGCTTGGTGGATTGGGCTCGGCCAAAGTTGAACGATAAGAGAAAGCTTCTTCAAATAATCGACCCAA GACTGGAGAACCAATACTCGGTAAGGGCAGCACAGAAAGCTTGCAGCTTGGCGTACTATTGCCTGAGCCAGAATCCCAAGGCGAGACCTTTGATGAGCGA TGTCGTCGAAACTCTCGAACCCCTTCAGTGCAGTAGCGACGGAGCCAACGAAGTAGTCATGCCCTCGTTAAGGACAGGCATGGGGGGAATGGTCGATTAT CGAACACGCCGAAGATATGCTGCAAATGTCGGTCCGGGTTCTAGTTGTCGGTCGCCTAGTCCCAATGTCGCCCCCCCGGGAGGCCCACCAGCTTGCCGGG TAAGTGAAGGCTCTGCCGATTCGTTGGAGATGATCGAAATGCCACATGACCATCTGGAATCCGAGACATGGAGATATGCAGCTGTGATCTGGGAGAGTGA ACACCAGGAACGTGTGTGA
AA sequence Show only first row Show all	>Lus10036762 pacid=23171130 polypeptide=Lus10036762 locus=Lus10036762.g ID=Lus10036762.BGIv1.0 annot-version=v1.0 MGNCGTREESAVVVVVPTSQAAQHQQSSSSSAAAATKSLERKPPYHNRSISDLSDPSSTPRSVDHFADGGKNALLLYTHVISFTLFELETITKSFRSDYI LGEGGFGTVYKGYIDENVRVGLRSLPVAVKVLNKEGLQGHREWLTEVNFLGKLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTAVPLSWATR MMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDHTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRK SVDKTRPSREQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCSSDGANEVVMPSLRTGMGGMVDY RTRRRYAANVGPGSSCRSPSPNVAPPGGPPACRVSEGSADSLEMIEMPHDHLESETWRYAAVIWESEHQERV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	0	1
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	1.4	0.8511
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	2.4	0.8398
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	4.5	0.8247
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	4.5	0.8350
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	5.2	0.8522
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	8.4	0.8311
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	10.1	0.8309
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	14.1	0.8099
AT3G57400			unknown protein		Lus10042067 [exp]	14.5	0.8103
AT3G21400			unknown protein		Lus10006520 [exp]	15.0	0.8250

Compare expression of checked genes

Lus10036762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.