Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 337 / 9e-118 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G26770 337 / 1e-117 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G03090 332 / 9e-116 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 307 / 4e-106 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G02260 295 / 5e-101 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G29030 291 / 1e-99 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G40610 290 / 2e-99 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G39700 285 / 3e-97 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 284 / 9e-97 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 280 / 3e-95 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037164 [exp] 401 / 7e-143 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 347 / 2e-121 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 306 / 2e-105 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10034227 [exp] 303 / 2e-104 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 301 / 2e-103 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10009917 [exp] 296 / 8e-102 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 296 / 1e-101 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10029038 [exp] 283 / 1e-96 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10030449 [exp] 278 / 2e-95 AT1G69530 364 / 4e-129 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088300 [exp] 353 / 4e-124 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 341 / 3e-119 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 332 / 6e-116 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 330 / 4e-115 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G060800 [exp] 324 / 6e-113 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.001G001100 [exp] 315 / 2e-109 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 311 / 1e-107 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 304 / 8e-105 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.016G135200 [exp] 296 / 9e-102 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 294 / 9e-101 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10036763 pacid=23171076 polypeptide=Lus10036763 locus=Lus10036763.g ID=Lus10036763.BGIv1.0 annot-version=v1.0 ATGGGTCTCGCCCCATTCCTCGCTATTATGGCTCTGACGGCCGCAATGGCGTCTTCTGTCCACGGCTACGGTGGCAGAGGTGGCAACTGGGTTAACGCTC ATGCAACTTTCTACGGCGGCGGTGATGCCTCAGGAACAATGGGTGGGGCGTGTGGTTATGGGAATCTGTACAGTCAAGGCTATGGAACGAACACGGCTGC GTTGAGCACGGCTCTGTTCAACAATGGACTTGCTTGTGGGTCCTGCTACGAGATTAAATGTGTGAATGACCGGAGATGGTGCCTACCCGGTTCGATTCTC ATCACCGCCACTAATTTCTGCCCGCCGAACAACGCGCTGCCTAACAACGCCGGCGGGTGGTGTAACCCTCCTCAGCACCACTTTGACCTCTCTCAGCCTG TTTTCCAGCACATTGCTCAGTACAAGGCTGGAATCGTTCCTGTTGCTTACAGAAGGGTGGCCTGCAGGAGAAGAGGAGGAATAAGGTTCACAATCAACGG CCACTCATACTTTAACCTAGTCCTAATCACCAACGTCGGCGGGGCCGGCGACGTGCATTCAGTGGCAATCAAAGGATCAAGAACAGGATGGCAAGCAATG TCGAGGAACTGGGGGCAAAATTGGCAAAGCAACAGCAAGCTCGACGGTCAAGCTTTGTCCTTCAAAGTTACAACCAGTGATGGCCGCTCTGTTGTGTCCT ACAACGTCGCCCCTTCCCGTTGGTCATTCGGCCAGACTTTCGCCGGCGCTCAGTTCCGTTGA
AA sequence Show only first row Show all	>Lus10036763 pacid=23171076 polypeptide=Lus10036763 locus=Lus10036763.g ID=Lus10036763.BGIv1.0 annot-version=v1.0 MGLAPFLAIMALTAAMASSVHGYGGRGGNWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLACGSCYEIKCVNDRRWCLPGSIL ITATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQHIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVAIKGSRTGWQAM SRNWGQNWQSNSKLDGQALSFKVTTSDGRSVVSYNVAPSRWSFGQTFAGAQFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	1.0	0.8966
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	5.7	0.8308
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	6.0	0.7836
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	7.7	0.8035
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	10.0	0.8313
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	10.0	0.8159
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	11.0	0.7858
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	12.7	0.8000
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	14.1	0.8186
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	15.6	0.7969

Compare expression of checked genes

Lus10036763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.