Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14180 94 / 5e-22 RING/U-box superfamily protein (.1.2) AT5G18260 77 / 6e-16 RING/U-box superfamily protein (.1) AT4G39140 73 / 2e-14 RING/U-box superfamily protein (.1.2.3.4.5) AT2G21500 59 / 8e-10 RING/U-box superfamily protein (.1.2) AT1G75400 57 / 3e-09 RING/U-box superfamily protein (.1) AT1G19680 54 / 5e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037162 [exp] 286 / 1e-91 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020256 [exp] 81 / 6e-17 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 80 / 2e-16 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10017978 [exp] 65 / 1e-11 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 65 / 1e-11 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10008046 [exp] 54 / 2e-08 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002316 [exp] 52 / 3e-07 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032300 [exp] 79 / 3e-16 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 77 / 7e-16 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.005G231500 [exp] 72 / 4e-14 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 69 / 4e-13 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.009G120000 [exp] 69 / 5e-13 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.004G158400 [exp] 64 / 2e-11 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.006G063100 [exp] 60 / 2e-10 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 59 / 3e-10 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 49 / 2e-06 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036764 pacid=23171318 polypeptide=Lus10036764 locus=Lus10036764.g ID=Lus10036764.BGIv1.0 annot-version=v1.0 ATGATACGCAATCCGTTTTACTCTCAGCACAATGTTACATCTGATGGTGGAGGAGAGGGTTTTCTCAGTAGCTTTGATGAGTTTGAAGCTGCAACAAGTA GAGGAAACCACGGAAGGGTCTCATCGTTCTCGAATTCAGACATTAGCGAGTTCGAGGCTTCCTTCAAGTCTTCCCGTTGCAGCAACTTCTCGAGTGGCAG GTCGTTTATGTCGAAACCTATCCATCCTTTATCTACTGTGTACCACGACTACGAAGCTTCGACCAGTCAAAGAGATGCATATAGCCGGAGAAGTACTGCT AGCAGCAGTAGCAGCACTGATTTCGCAGATGTTTCCGAAACATTCGAGCCCGAGAATCTAGCATGTCCATCGGCTGATGGATTCAGATGTGGGCTTTGTG AAAGGTTTCTTTCACACAGATCTCCGTACAGCTCTCGTAGGATCACGATAACTGGAACTATGCCTCCTTCTGCGGTTCTTTCTTGTCGCCATGTCTTCCA CTCCGAATGCTTAGATCAGATAACTCCCGTTTCGCATTCGAGTGATCCACCATGCCCCATTTGTTCAAGATTTGAAGAAGGGATTTCCAGGTTGATGAAA AGCTTCCCGAAGTTCAGTAGACCATTGGTCGAGGATGCACAGTCGAGACCTCGGGTCGTGTGTGTACAGAAGGCACCACAATGCAACACTATGTTGGTTC TGAATCGAAACCGTTTGAGAAAGAATCTTGCTTTGAAAGGCAACTCTATCAGAGGATTAACTGGTAAGGTGAGGAGCAACGGTTTGTCTTCTTCGCAGGT CTCGAGTTCTCATTCGAGCAATGGAGCTGTAGCTGGTGGCTGCTCGAAGGCTGCAGCAGGGATCCAAGTGTGA
AA sequence Show only first row Show all	>Lus10036764 pacid=23171318 polypeptide=Lus10036764 locus=Lus10036764.g ID=Lus10036764.BGIv1.0 annot-version=v1.0 MIRNPFYSQHNVTSDGGGEGFLSSFDEFEAATSRGNHGRVSSFSNSDISEFEASFKSSRCSNFSSGRSFMSKPIHPLSTVYHDYEASTSQRDAYSRRSTA SSSSSTDFADVSETFEPENLACPSADGFRCGLCERFLSHRSPYSSRRITITGTMPPSAVLSCRHVFHSECLDQITPVSHSSDPPCPICSRFEEGISRLMK SFPKFSRPLVEDAQSRPRVVCVQKAPQCNTMLVLNRNRLRKNLALKGNSIRGLTGKVRSNGLSSSQVSSSHSSNGAVAGGCSKAAAGIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	1.0	0.9823
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	2.4	0.9623
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	3.0	0.9685
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	3.5	0.9712
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	3.7	0.9615
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	3.9	0.9675
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	5.1	0.9552
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	5.7	0.9679
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	6.0	0.9522
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	6.5	0.9504

Compare expression of checked genes

Lus10036764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.