Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023847 [exp] 246 / 3e-77 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10027939 [exp] 160 / 3e-46 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 67 / 3e-13 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108300 [exp] 64 / 1e-12 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.004G146600 [exp] 59 / 2e-10 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036765 pacid=23171121 polypeptide=Lus10036765 locus=Lus10036765.g ID=Lus10036765.BGIv1.0 annot-version=v1.0 ATGGGAAAAGAATCACCATCTACTGGTACTGTGATTCCCACAAGAACACATGGAAAAGTTTCTGGGTTCCTAACACCTCAAGCAAATGTTGATCATGCGT TAGTCAATGAGAAGGAAAATGAAAAACATATAGTAGCAGGTCAGAGTAGTGAGTACTTTGCAGGAGTTGGTACTATTGATGAATCTCAGACTACCACCAA GCATTCAATGAATGAAAATGTGGGCAAGCTTAAGCGGTCAAATAGCACTTCAGCTTTGAGAAATCAGCCTGAAAAGAAGAGGGCATTGGAACCGGAACAT GCAAGTTCCATTATCTCAGAGTACAGTGCAGATTTTGTTGGGCATGCTTTGGATTCTGCTGTTAAATTCATACCTGATAAAGTATTGCGCATTGACTCAA CTAATGTTCCAAAGCTTCAAGCTACGGTGGTGATTTCACTTGGAATGCAGGCAAGATACAATGGGTACTGA
AA sequence Show only first row Show all	>Lus10036765 pacid=23171121 polypeptide=Lus10036765 locus=Lus10036765.g ID=Lus10036765.BGIv1.0 annot-version=v1.0 MGKESPSTGTVIPTRTHGKVSGFLTPQANVDHALVNEKENEKHIVAGQSSEYFAGVGTIDESQTTTKHSMNENVGKLKRSNSTSALRNQPEKKRALEPEH ASSIISEYSADFVGHALDSAVKFIPDKVLRIDSTNVPKLQATVVISLGMQARYNGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036765 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	1.0	1.0000
AT2G16190			unknown protein		Lus10011284 [exp]	2.0	1.0000
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	2.4	1.0000
					Lus10006395 [exp]	2.8	1.0000
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	3.2	0.9852
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	3.5	0.9794
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	3.7	0.9791
					Lus10038080 [exp]	4.2	0.9712
					Lus10027005 [exp]	5.1	0.9644
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	5.3	0.9641

Compare expression of checked genes

Lus10036765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.