Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69523 247 / 4e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69526 224 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G69520 203 / 8e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 44 / 0.0001 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G48600 43 / 0.0002 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037162 [exp] 375 / 9e-126 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023995 [exp] 44 / 9e-05 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10022301 [exp] 42 / 0.0004 AT3G01660 345 / 5e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088500 [exp] 310 / 3e-105 AT1G69523 315 / 4e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G263700 [exp] 44 / 0.0001 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 43 / 0.0002 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.010G167150 [exp] 40 / 0.0003 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10036766 pacid=23171322 polypeptide=Lus10036766 locus=Lus10036766.g ID=Lus10036766.BGIv1.0 annot-version=v1.0 ATGACGACGATGATCGGCCGGTGGACTCCGCCGCCGTCTACACCACCGTCATTCACGTCCACCTTTTCCGCCGGCGCCCAGCGCAGCTCTTCCGTCAAAT CTAATTCCACAATTCTAATCCGTAGATGCTCCAATTCATCCGATACTCCTCCAGAAGGCCAATCAATGAACACAAAACCCAACCTACCACCACTCCCGCC AAATTTCTGCCGCTGCTGCCGAAGGCATTTCATCGGAGCAGCAGTAATTTCGACACTTCCGCTGCATCCCTCAATCGCTTCCGATTACAGGGCTGTGATG AACAGAGTTCATCCACCCAGACCCGATTGTCCAGTTGAGAAGTCGTTGCTGTTCAGTAAGTTAAAGGGAAAGGCTAAGAAAGTACTGGAGATCGGCATTG GGACCGGACCGAATCTCAAGTACTACGCTGGTAGTAAGAATGCTGACATTCATGTCACTGGCATTGATCCCAACAGTAAGATGCAGAGGTATGCATCTCA AGCTGCTATTGCTGCTGGATTACCTCCTTCGAGCTTCCAGTTCGCCCAAGCTGTTGATCCATATTTTAACACCATACCGCTCGATGATGCTTCTGTTGAT GCAGTCATTGGGACACTTGTTTTGTGTTCTGTCGAAGATGTCGATCTCACGCTGCAAGAGGTTAAGAGAGTGCTGAAGCCAGGAGGGGTGTACGTATTCG TGGAGCATGCTGCTGCAAGAGATGGAACAACGCAAAGGTTGCTGCAAAATGTTGTTGATCCGTTGCAGCAGACACTTGCTGATGGATGTCATCTAACAAG GGAAACGGGAACCCGGATTTCGAAAGCCGGGTTCTCGTTCGTGTACCTGGACTCGGCTTATTTGTCCAGTGCCTTGTTCATCAACCCTCATGTGTATGGA ATGGCTACTAAGTAA
AA sequence Show only first row Show all	>Lus10036766 pacid=23171322 polypeptide=Lus10036766 locus=Lus10036766.g ID=Lus10036766.BGIv1.0 annot-version=v1.0 MTTMIGRWTPPPSTPPSFTSTFSAGAQRSSSVKSNSTILIRRCSNSSDTPPEGQSMNTKPNLPPLPPNFCRCCRRHFIGAAVISTLPLHPSIASDYRAVM NRVHPPRPDCPVEKSLLFSKLKGKAKKVLEIGIGTGPNLKYYAGSKNADIHVTGIDPNSKMQRYASQAAIAAGLPPSSFQFAQAVDPYFNTIPLDDASVD AVIGTLVLCSVEDVDLTLQEVKRVLKPGGVYVFVEHAAARDGTTQRLLQNVVDPLQQTLADGCHLTRETGTRISKAGFSFVYLDSAYLSSALFINPHVYG MATK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10036766 [exp]	0	1
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	26.3	0.5739
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	38.6	0.5624
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	61.2	0.5446
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	77.9	0.5335
AT5G16100			unknown protein		Lus10020810 [exp]	94.0	0.4850
					Lus10008773 [exp]	96.4	0.4730
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10019539 [exp]	123.5	0.4640
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	136.7	0.4662
AT5G02700			F-box/RNI-like superfamily pro...		Lus10037151 [exp]	148.7	0.4245
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	173.1	0.4561

Compare expression of checked genes

Lus10036766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.