Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 370 / 3e-121 RNA-binding KH domain-containing protein (.1.2) AT1G14170 360 / 1e-118 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 116 / 5e-27 RNA-binding KH domain-containing protein (.1) AT1G51580 105 / 2e-23 RNA-binding KH domain-containing protein (.1) AT5G53060 98 / 3e-21 RNA-binding KH domain-containing protein (.1.2) AT4G18375 97 / 8e-21 RNA-binding KH domain-containing protein (.1.2) AT2G03110 88 / 3e-20 RNA binding;nucleic acid binding (.1) AT5G64390 87 / 1e-17 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G26000 64 / 1e-10 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 61 / 1e-09 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037163 [exp] 769 / 0 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 400 / 4e-133 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 399 / 6e-132 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 138 / 4e-34 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 136 / 1e-33 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10007236 [exp] 110 / 5e-25 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 110 / 7e-25 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10033557 [exp] 104 / 6e-24 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10022390 [exp] 105 / 1e-23 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088600 [exp] 548 / 0 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 535 / 0 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 414 / 1e-138 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 394 / 6e-131 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 180 / 2e-48 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 145 / 1e-36 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 127 / 8e-31 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 126 / 3e-30 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 111 / 2e-25 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 111 / 2e-25 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10036767 pacid=23171281 polypeptide=Lus10036767 locus=Lus10036767.g ID=Lus10036767.BGIv1.0 annot-version=v1.0 ATGGCCGGCCAACGCAACGACTACGGCAAGAGATCGTCGAATTCCCACTCAGACTACGGCGGAGGAAAGCGTCACAACCCCTCCGGCGACGACTCCGGCG ACCTCCCGCACGGGATTGGCAACGACGACACCGTCTACCGCTACCTCTCCCCCGTCTACCGCTACCTCTGCCCCGTGAGAAAAATCGGGAGCATAATCGG CAGGGGTGGAGAGATCGCGAAGCAGCTGCGGGCCGAGAGCAAGTCGAGCATCCGCATCAGCGAGTCAATCCCAGGGTTTGACGAGCGGATTGTGACTGTT TACAGCACCAGCGAGGAGACGAATTCTTTCGGCGGCGGAGGGGAAGAAGGGGAGGAGGAGGACGGTAGTGGTGGTGGTGGTGATTTGGTGTGTCCGGCTC AGCACGCGCTTTTTCTTGTTCACGATCGGGTTGTGGCAGAGGAGCGTGGAAGGGAGGAGGAAGATGTGGAGGATGATGATGAGGATGAGACTGGGGAAGT TCAACGGAAGCAGGTTAGTGTGAGGATGTTGGTTCCCTCTGATCAAATTGGGTGCGTGATTGGGAAAGGTGGACAGGTGATTCAGGGGATTCGGAGTGAG ACTGGTGCTCAGATTCGGATTCTAAAGGATGAGCATCTTCCTCCCTTTGCATTGACAACTGATGAGCTTCTCCAGATTGTAGGAGAGCCTGCAGTTGTAA GGATGGCGCTTATGCAAGTGGCATCGAGGCTTCACGAGAACCCCTCTCGATTTCAGCACTTGCTGCTGTCTACTTCAAGCAATCCGTATCAGTCTGGTGG GGGTGGGATGTTTGTGCCGCCGAGTAGTGGTGTTCCAGCTTATGGAGGTTACAAAGGTGGGTGGCCGGATTTGAGAGATGATGCTGGTTCAGCTAGGGAT TTCGCGATTCGTTTGGTCTGTCCGATTGGGAATATTGGGAGTGTGATTGGGAAAGGTGGTAGCATTATTAAACAGATTCGACTGGAGACTAGGGCTGGTA TTAAAGTTGATAGCTCTGGTGCTGATGGAGATGATTGTATTATATTTATTTCGGCAAAAGAGGTTTTGGAGGATCAATCACCGACCATTAATGCAGCACT GAAGATGCAACCTCGTTGCAGTGAGAAATCTGAAAGAGACTCTGGAGATTCTGTACTGACCACTCGTATACTTGTACCAAGGTCACAGGTCGGATGTCTT ATGGGTAAAGGCGGGTCCATTATTTCGGAAATGAGGAGTATTACTAGGGCAAGCATACGGATTCTTTCGGAGGATAATCTTCCTAAAGTTGCATCTGAAG ATGACGAAATGGTGCAGATCACTGGAAACCATGATGTTGCCAGCAATGCCCTTTTGCAAGTACTCCTAAGGTTGAAAGCCAATGTCTTTGGAAGAGATGG TGCTCTTTCTTCATTTCAACCAGCTCTTCCATATGTCCCAATGCCTTTAGAAATGTCAGATGGTTTAATAGGAAGCCGAGACGGTCAATCTCGTGGGCGT GGTGGATACCCTGCAGCCTCAGGATCGTACGGTTCTCTACATTCAAGTGACAGCTATGCGAGTCCATTGGCTGGTGGCGAAAGTGGTTATGGTGCATATG GCAACTTGTCTTCTGGTAGATCCAGTGGTGCTGGAATGTGTTTTAATGCTGATTCCGCTGTCCTTTACCAGATTGTTGGGCCAGAACGCCTTTTCCCAGA GAAAGCATCATGGATATTAGTCTCTAACACCAGGCAGCAGTTTTCGTTAAGGAGACGGGAACGGTTATCATGTGGCATTCTGAGCCTGTTCTATGACTGG AAATAA
AA sequence Show only first row Show all	>Lus10036767 pacid=23171281 polypeptide=Lus10036767 locus=Lus10036767.g ID=Lus10036767.BGIv1.0 annot-version=v1.0 MAGQRNDYGKRSSNSHSDYGGGKRHNPSGDDSGDLPHGIGNDDTVYRYLSPVYRYLCPVRKIGSIIGRGGEIAKQLRAESKSSIRISESIPGFDERIVTV YSTSEETNSFGGGGEEGEEEDGSGGGGDLVCPAQHALFLVHDRVVAEERGREEEDVEDDDEDETGEVQRKQVSVRMLVPSDQIGCVIGKGGQVIQGIRSE TGAQIRILKDEHLPPFALTTDELLQIVGEPAVVRMALMQVASRLHENPSRFQHLLLSTSSNPYQSGGGGMFVPPSSGVPAYGGYKGGWPDLRDDAGSARD FAIRLVCPIGNIGSVIGKGGSIIKQIRLETRAGIKVDSSGADGDDCIIFISAKEVLEDQSPTINAALKMQPRCSEKSERDSGDSVLTTRILVPRSQVGCL MGKGGSIISEMRSITRASIRILSEDNLPKVASEDDEMVQITGNHDVASNALLQVLLRLKANVFGRDGALSSFQPALPYVPMPLEMSDGLIGSRDGQSRGR GGYPAASGSYGSLHSSDSYASPLAGGESGYGAYGNLSSGRSSGAGMCFNADSAVLYQIVGPERLFPEKASWILVSNTRQQFSLRRRERLSCGILSLFYDW K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	0	1
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	2.4	0.9444
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	4.4	0.9529
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	4.5	0.9468
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	5.7	0.9460
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	7.5	0.9455
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	7.7	0.9321
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	8.5	0.9387
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	10.1	0.9313
AT5G10190			Major facilitator superfamily ...		Lus10038972 [exp]	11.2	0.9166
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	11.2	0.9327

Compare expression of checked genes

Lus10036767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.