Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04980 319 / 3e-92 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 296 / 3e-87 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 251 / 2e-71 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 251 / 2e-71 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 216 / 1e-57 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 198 / 4e-55 Domain of unknown function (DUF3444) (.1) AT3G04960 196 / 1e-53 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G18730 191 / 6e-52 unknown protein AT3G06340 186 / 4e-49 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G05110 174 / 2e-47 Domain of unknown function (DUF3444) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037161 [exp] 1889 / 0 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 727 / 0 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 671 / 0 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 420 / 2e-130 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 318 / 5e-94 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 305 / 4e-89 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 291 / 9e-86 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 281 / 2e-82 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 275 / 7e-80 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043200 [exp] 711 / 0 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 702 / 0 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 432 / 3e-135 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 281 / 5e-82 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 267 / 5e-77 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 231 / 9e-65 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 206 / 4e-59 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.015G020200 [exp] 180 / 6e-47 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 178 / 4e-46 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 160 / 3e-45 AT5G18730 158 / 1e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10036769 pacid=23171201 polypeptide=Lus10036769 locus=Lus10036769.g ID=Lus10036769.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACAAAGAGGAGGCAGTAAGAGCAAGGGAACTCGCAGAGAAGAAATTGCTAATGGGTGATTACGAAGGGGCGCGCAAAATTGCATTAAAGG CTCAGAAACTCTATCCCGACATTGAGAACTTGTCCCAGTTGTTAGTCGTTTGTAACGTCCATTGCTCTGCAGCTAGCAAGCTAAGTGGTTCAGTCTCTGA TTGGTATGCGATTCTTCAGATTGATCGCTTTTCAGATGAGGCAGTCATTCTGAAGCAGTACAGAAAGCTTGCGCTTTCCCTTCATCCGGACAAGAACAAG TATGCTGGTGCAGAGGCTGCTTTCAAGCTCATTGGAGAAGCAAAGAGGGAACTTACAGACCCGAAAAAGCGTGCTTTGTTCGATGCAAAATGTAGAGTTT TGGATAGACCAGCTGCACCTAAAGTGACAGCAAACAGTAAAGGGGCCGGAACGAAACCATCTGCCGCTTCTCATCAGAACACTAGAGGGCATACTTATCA ACAGACTCAACCAGAACGTGTGGGATCAAATTCTCATGGGCAGCCAGAAGAAGAAACGTTCTGGACTTGCTGCCAATCTTGTAAAGTGAAGTTTCAGTAT TATGCACAGTTCCGAAATAAGATGTTGAGATGTCATATTTGCAATAAGCATTTTGTTGCGCAGGAGGTGGTTGTGACGGGTGTATCACCTCGATCTGCTT ATTTTGGCTCTGCAAGTCATCCAGGAGCTAATATTCAAGGATCTGGTAATGTTGCTCCACAAAGTAACGGTGGAAAGTCCACTTCTGCTGGTGTGGAGTT AAGACCTGATGAAGGAAAAGCTACAAGTGTTAATGGGAAGCCTAAATCAAAAGAGGCAAAGGCAGGTAATGCTGGTGGAATTTACAACTATTTTAAACCG CAAGTGAAAGCTCATGAGCAAGTATATGGTGAAACTGGTAAAAAATCTGATGTTGACATGAGTGCTGCTGGAAGACCTTCAAGATCCTCAAGTAAAAAGC GGCTGAATCCTCTTGAAGAGAGTTCTGGTGATGATGAATTTGTTGCTCCTCCATCAAAAAGATCGCAGGCGAAAAAATCATCTGCTGGCTCTGGACAAGA GATGGAGAAACCATCTGGACCAAAGCAAGAACCTGAGCGTGATACTGAAGAAATTCTACGCGGAAAGAAAGGTAGAGCTGAAGGTATTCAGGCCAGTGAA GATGAAGCTTCCATTTCTGAGAAACTGGAAGCAAATGGTTCGGGCAGTGGTCGTGAAACGGAACTCAGTCAAGAACATATTCAGTGTCCTGATGCGGAGT TCACAGACTTTGAAAAAGACAAGTCTGAAAATTGTTTCAAAGTTAATCAAGTATGGGCTTTGTATGATGAAATAGATAGCATGCCGAGATTTTATGCACG GGTCAAGAAAGTTCTTTCACCTGGTTTTAAGCTGCTGATTACTTGGCTGGAAGCTTCTCCAGGTACCAAGGAGGAGGAATGCTGGGAAGATGCTGATTTA CCAATTTCGTGTGGTACATTTGTTAACGGGGACTCTGACAAAATCGGAGACCGTCTCATGTTTTCGCATCGAATGGATTGTAGAAGAGGAAAGGGCAAAG GAACTTTTGTAATCTACCCTAAGAAGGGGGAGACCTGGGCACTATTCAAGGATTGGGATATTAAATGGGGGGCTGAACCAGAGAAGCATAAACCACCATA TTGCTTCAATTTCGTCGAGATTCTATCAGATTTTACGGAGGAATCTGGCGTTATGGTTGCTTATCTGGACAAGGTGGAAGGGTTCGTTAGTATCTTTGAG AGATCCTTCAGCCATGAAAAAACGGTTACCTCTTTTTTCATAAAACGCTCTGAGTTGTACAGATTTTCACATCGCATTCCCTTTCGCGAGATGACTGGGA TGGAAAGTCTAGGTGTCCCCGTTTCTTTCGAACTCGATACAGCTGCGCTACCTAGCAGTCTCTATAGCCGCGATGACATCAAACAACAAGCACAGGCAGA GGAGGTACACTGTAGTAAGGAAGCAACTAGTACGAAATCTACAAGAACCCCTCAAGAATCACGCCCTTCGAGGATAAACAAGATTAGTCCGGAAGGATCG GTGGTTTGTGGGTTGTCGGCAGGACTTCCAAGTGTTATACGCATTGAGGATGATTCCATGGGGAAGGATGAAGAGGTTGAACATGGGGAACCTGTGTTAT CGACACCGAGAAGATCTACTAGGGGCTTGAGAAAGGGAAATGGTAATGCTGATGTAAATGCAAACCGGCCAGTTATAGTAGAGGGCGGTGCCAGGAAGCG GAAGGATCCTAGCGCAAGTACTGGAAACCATGCTCAAACATGTGGTTCGTTCGAAAGCGATTCTGATTTCAATATCGAATCTCATAAGCCAGGTGGAAGT TCAGCATGCCTTGCAGGAGGAACGCCTGTGTCCTCTGCCAAGTTGAAAGTCGAAGCAGTAAAACACGATTTCAACAAGGAAAGGTCTGCAGGAAAGTTTA AAACCGGTCAGGTATGGGCGATTTTCAGCAAAGAAGCAGGGATGATGCCAAAGGATTATGCCGTGGTGAAGAAGATTGAATATGCTCCTACTTTGACGTT GCATGTGGCTGTGCTCGAGTCGCCATCTTATCCAATCGGGACAGCTAGAGCTCTTAGTTGCGGTACATTCACAGAAGGTAGTAAAATAACAGTGGTTTCG GTTGCTCAGTTTTCGCATCTGGTGAATGCTAGGGCTACTGGTAAGAACAGGTACTTGATATGGCCTACGGAAGGTGGCATATGGGCGGTGTACAAGAGCT CGGAGTCGGAGCAAGGTGAGGGAGATGGAGAATTCGAGATTGTCAAGGTGCTTGAGGGGAAAGATGAGAGTGTAAAGGTCGTGACTTTGACGGCGTTGAC GAAACGCAGTGGACTTAAGTCGTTCTACAAAGCTCCCCAAAGTCAACGACTGAAAGTCGGCGAAATGGCGATTTCGTTCAAGGAGATTGACAGATTCTCT CATCAGTGCGCAGCCTACTACCATGAAGATAACGGGTGTTGGGAGGTTGACTCTTCATCAGTCCCTTGTCAAGTGACAGAGTTGGAATGA
AA sequence Show only first row Show all	>Lus10036769 pacid=23171201 polypeptide=Lus10036769 locus=Lus10036769.g ID=Lus10036769.BGIv1.0 annot-version=v1.0 MEANKEEAVRARELAEKKLLMGDYEGARKIALKAQKLYPDIENLSQLLVVCNVHCSAASKLSGSVSDWYAILQIDRFSDEAVILKQYRKLALSLHPDKNK YAGAEAAFKLIGEAKRELTDPKKRALFDAKCRVLDRPAAPKVTANSKGAGTKPSAASHQNTRGHTYQQTQPERVGSNSHGQPEEETFWTCCQSCKVKFQY YAQFRNKMLRCHICNKHFVAQEVVVTGVSPRSAYFGSASHPGANIQGSGNVAPQSNGGKSTSAGVELRPDEGKATSVNGKPKSKEAKAGNAGGIYNYFKP QVKAHEQVYGETGKKSDVDMSAAGRPSRSSSKKRLNPLEESSGDDEFVAPPSKRSQAKKSSAGSGQEMEKPSGPKQEPERDTEEILRGKKGRAEGIQASE DEASISEKLEANGSGSGRETELSQEHIQCPDAEFTDFEKDKSENCFKVNQVWALYDEIDSMPRFYARVKKVLSPGFKLLITWLEASPGTKEEECWEDADL PISCGTFVNGDSDKIGDRLMFSHRMDCRRGKGKGTFVIYPKKGETWALFKDWDIKWGAEPEKHKPPYCFNFVEILSDFTEESGVMVAYLDKVEGFVSIFE RSFSHEKTVTSFFIKRSELYRFSHRIPFREMTGMESLGVPVSFELDTAALPSSLYSRDDIKQQAQAEEVHCSKEATSTKSTRTPQESRPSRINKISPEGS VVCGLSAGLPSVIRIEDDSMGKDEEVEHGEPVLSTPRRSTRGLRKGNGNADVNANRPVIVEGGARKRKDPSASTGNHAQTCGSFESDSDFNIESHKPGGS SACLAGGTPVSSAKLKVEAVKHDFNKERSAGKFKTGQVWAIFSKEAGMMPKDYAVVKKIEYAPTLTLHVAVLESPSYPIGTARALSCGTFTEGSKITVVS VAQFSHLVNARATGKNRYLIWPTEGGIWAVYKSSESEQGEGDGEFEIVKVLEGKDESVKVVTLTALTKRSGLKSFYKAPQSQRLKVGEMAISFKEIDRFS HQCAAYYHEDNGCWEVDSSSVPCQVTELE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	0	1
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	1.0	0.9718
AT1G67040			unknown protein		Lus10033565 [exp]	3.5	0.9537
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	3.5	0.9610
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	5.3	0.9448
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	6.0	0.9457
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	6.9	0.9520
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	10.1	0.9318
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	10.5	0.9458
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	11.3	0.9338
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	11.8	0.9411

Compare expression of checked genes

Lus10036769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.