Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1) AT5G15290 108 / 2e-30 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT2G36100 77 / 5e-18 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 72 / 3e-16 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT3G11550 70 / 2e-15 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT5G06200 62 / 1e-12 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G06390 51 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT1G03700 47 / 3e-07 Uncharacterised protein family (UPF0497) (.1) AT4G03540 46 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT4G15610 44 / 6e-06 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037160 [exp] 236 / 2e-80 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 117 / 5e-34 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 116 / 2e-33 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 79 / 1e-18 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 75 / 2e-17 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 64 / 4e-13 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 64 / 6e-13 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 65 / 7e-13 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021332 [exp] 61 / 5e-12 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032300 [exp] 105 / 2e-29 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 83 / 5e-20 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 81 / 1e-19 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 63 / 1e-12 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 62 / 3e-12 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 47 / 5e-07 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 45 / 2e-06 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 45 / 3e-06 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 43 / 2e-05 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 42 / 4e-05 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10036770 pacid=23171260 polypeptide=Lus10036770 locus=Lus10036770.g ID=Lus10036770.BGIv1.0 annot-version=v1.0 ATGAAGCCGTCAGAGACAGCATCAGCTGCTGAGTTAGCACCACCAGGGGATGGAGGTGATCAATCTTCTTTATCTCGAAACCGGGAAGTGATGAAGCCAG GGATCTCGATACTAGACCTCATGGCAAGGTTTTTAGCAGCTGCTGGGACACTAGGGAGTGCCATAGCCATGGGAACCACCAATGAAACAGTAACAGTTGC AGCTTTCTCTCAGCTTCTCCAGTTCAACATTAAGTTCAACGATCTCCCCGTCTTCACCTCAGCAAAAACCAGCAGGATCATCATGGTTAGCTTGGACACA GTTATGCTTTTAATCCTGACAGCAGGAGCTTCATCAACAGCAGCCATGGTTTACTTGGCACACAAGGGGAATGCAAATGCTAATTGGTCAGCAATCTGCC AGCAGTTCGACAGTTTCTGCAACTGA
AA sequence Show only first row Show all	>Lus10036770 pacid=23171260 polypeptide=Lus10036770 locus=Lus10036770.g ID=Lus10036770.BGIv1.0 annot-version=v1.0 MKPSETASAAELAPPGDGGDQSSLSRNREVMKPGISILDLMARFLAAAGTLGSAIAMGTTNETVTVAAFSQLLQFNIKFNDLPVFTSAKTSRIIMVSLDT VMLLILTAGASSTAAMVYLAHKGNANANWSAICQQFDSFCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10020977 [exp]	1.4	0.9690
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	3.5	0.9728
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	5.7	0.9649
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	7.1	0.9675
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	8.5	0.9613
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	13.0	0.9585
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	13.8	0.9623
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10011056 [exp]	14.0	0.9377
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	15.9	0.9579
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	18.1	0.9609

Compare expression of checked genes

Lus10036770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.