Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 223 / 1e-74 Protein of unknown function (DUF962) (.1) AT1G74440 213 / 1e-70 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030447 [exp] 281 / 2e-97 AT1G18720 256 / 2e-87 Protein of unknown function (DUF962) (.1) Lus10001646 [exp] 195 / 3e-63 AT1G18720 246 / 3e-83 Protein of unknown function (DUF962) (.1) Lus10021661 [exp] 186 / 9e-60 AT1G18720 242 / 8e-82 Protein of unknown function (DUF962) (.1) Lus10021660 [exp] 145 / 7e-44 AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 120 / 2e-35 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088800 [exp] 262 / 8e-90 AT1G18720 245 / 4e-83 Protein of unknown function (DUF962) (.1) Potri.010G166500 [exp] 241 / 1e-81 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [flax] [poplar] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Lus10036771 pacid=23171132 polypeptide=Lus10036771 locus=Lus10036771.g ID=Lus10036771.BGIv1.0 annot-version=v1.0 ATGGCGAGGTTGTCGTTGTTTGATCTAGAGCGACACTTCGCCTTCTACGGAGCATACCACAGCAACCCAACCAACGTATTGATTCACATGATATTCGTCT GGCCGATTCTCTTCGCTACCCTTCTAATTCTCCACTTCACCCCTCCTTTATTATCCATCAACATTCACCTCTTCCCTCTCAATTCCTTCCTTGTTTTCAA CGTTGGCTTCTTGCTGACCTTTATCTATGGCTTCTTCTACATCTGCTTGGATAAGAAAGCTGGTTCCTTGGCTGCATTGATCTTGCTCTTCTGTCTGTTT GCTAGTAGCTTCCTGGGTTCTTGGCTTGGTTTCTCACTTGCTTGGAAGGTGGTTGTGGTTGCTCAGATTGTATGCTGGACTGGACAGTTCATTGGACATG GGGTGTTTGAGAAACGAGCTCCGGCTTTATTGGACAACCTTATTCAAGCCTTTGTAATGGCTCCCTTCTTTGTGCTGTTGGAGGCTCTACAAACCTTCTT TGGTTATGAACCGTACCCTGGATTTCACGAAACTGTGCAAGCTAAGGTCGATGCCGAGATCCGTGAATGGCAAGAGAAGAAGAAAAAGAAGTCAACTTGA
AA sequence Show only first row Show all	>Lus10036771 pacid=23171132 polypeptide=Lus10036771 locus=Lus10036771.g ID=Lus10036771.BGIv1.0 annot-version=v1.0 MARLSLFDLERHFAFYGAYHSNPTNVLIHMIFVWPILFATLLILHFTPPLLSINIHLFPLNSFLVFNVGFLLTFIYGFFYICLDKKAGSLAALILLFCLF ASSFLGSWLGFSLAWKVVVVAQIVCWTGQFIGHGVFEKRAPALLDNLIQAFVMAPFFVLLEALQTFFGYEPYPGFHETVQAKVDAEIREWQEKKKKKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	0	1
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	2.6	0.8961
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	4.5	0.8908
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	8.9	0.8844
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	9.8	0.8850
AT1G03250			unknown protein		Lus10028017 [exp]	14.0	0.8697
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	14.5	0.8710
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	22.9	0.8249
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	23.0	0.8432
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	23.0	0.8783
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	24.1	0.8411

Compare expression of checked genes

Lus10036771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.