Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69500 841 / 0 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT2G45510 401 / 7e-135 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 372 / 1e-123 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT4G00360 360 / 2e-118 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 359 / 5e-118 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 351 / 3e-115 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT2G45970 350 / 9e-115 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT5G23190 338 / 9e-110 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 334 / 4e-109 Cytochrome P450 superfamily protein (.1) AT5G58860 327 / 6e-106 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037157 [exp] 1042 / 0 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10038896 [exp] 421 / 3e-142 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 415 / 6e-139 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 413 / 7e-139 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 402 / 5e-130 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10018217 [exp] 350 / 8e-115 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 347 / 6e-114 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 348 / 3e-113 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10010193 [exp] 342 / 2e-111 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088900 [exp] 885 / 0 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.014G072300 [exp] 430 / 2e-146 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 427 / 5e-145 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072000 [exp] 394 / 2e-132 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G085800 [exp] 356 / 1e-116 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.007G072100 [exp] 354 / 3e-116 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.012G131200 [exp] 351 / 4e-115 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.005G092200 [exp] 342 / 3e-111 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.009G043700 [exp] 339 / 6e-111 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.003G129100 [exp] 338 / 5e-110 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036772 pacid=23171142 polypeptide=Lus10036772 locus=Lus10036772.g ID=Lus10036772.BGIv1.0 annot-version=v1.0 ATGGAAGATGAAAATGGTATAGTGTCAATGTTCTTCATCCTAGCCGGCTTCATCGTCTCGTGGGTTTTCGTCCACCGATGGAACCAGAGGAACAGCAAAG GTCCAAAGACATGGCCTCTCTTGGGGGCAGCGGTCGAGCAGCTGATGAACTATGACAGGATGCATGATTGGCTTGTCAATTACCTATCCGAGTCTCGGAC TGTCGTGGTTCCGATGCCATCCACAACCTACACTTACATTGCAGACCCTGCAAGCGTTGAACATGTCCTCAAGACCAACTTTGCCAACTATCCAAAGGGA GAGACTTACCATTCATACATGGAAGTTCTGCTTGGAGATGGGATATTCAATGTTGATGGTGACTTGTGGAGAAAGCAAAGGAAGACTGCTAGTTTCGAGT TTGCTTCGAAGAATCTGAGGGATTTCAGCACTGTTGTGTTCAGAGATTACAGCCTCAAACTCTCCTCTATTCTCAGCCAAGCTTCTTTCAACAACGAAGC AGTGGATATGCAGGAACTATTGATGAGGATGACTTTGGACTCCATATGCAAAGTAGGGTTCGGAGTCGAGATAGGAACTCTGGCTCCAAACCTGCCGGAC AATCAGTTTGCTCGAGCTTTCGATACTGCGAACATCATCGTTACGCTTCGATTCATCGATCCATTGTGGAGAATCAAGAAGTTGTTCAATGTAGGCTCGG AGGCTCTACTCGACAGGAGCATGAAGATCATCAATGACTTCACCTACACAGTGATTCGTCGAAGGAAAGCCGAACTGGAAGAAGCTCGAGCTACTGGCAA AGATAACAGCAAGGTCAACAGCAAGGTCAAACACGACATATTGACAAGGTTCATCGAGCTAGGCGAAGATCCGGAAAGCAAAATGACAGACAAAAGCCTA AGAGATGTCGTTCTGAATTTCGTGATAGCTGGTCGGGACACGACAGCTACAACCCTCTCATGGGCTGTGTACATGATAATGACACATAAGGAAGTAGCCG AGAAGCTCTACATGGAGCTCAAGGCTTTCGAGACTGACAGGGCAAAGGAAGAGAATGTAACATTGGTTCCGTGTGATGATGTGAACGTGATCGAATCGTT CAACCAAAGGGTAATGCAATATGCAGGGCTAATGAACTATGACTCATTAGGGAAACTTCACTATCTCCATGCAATTATCACAGAGACACTTAGGCTGTAC CCGGCAGTGCCTCAAGATCCCAAGGGAATTCTCGAGGATGATGTCTTACCGGATGGTACGAAGGTGAAAGCCGGAGGCATGGTCACTTATGTGCCGTATT CAATGGGGAGGATGGAGTATAACTGGGGACCTGATGCAGCTTTGTTCAAGCCGGAGAGATGGCTGAAAGATGGGATCTTTCAGAACTCATCTCCTTTCAA GTTCACTGCATTCCAAGCCGGGCCAAGAATCTGCCTAGGTAAAGACTCGGCATATCTCCAAATGAAGATGGCACTAGCCATCTTCTGCAGATTCTACAAG TTCAGCTTGGTGCCAAACCATCCAGTTCAATACCGAATGATGACAATTCTGTCAATGGCACATGGCCTCAAGCTGAAAACTACTAGATGCTTGTAG
AA sequence Show only first row Show all	>Lus10036772 pacid=23171142 polypeptide=Lus10036772 locus=Lus10036772.g ID=Lus10036772.BGIv1.0 annot-version=v1.0 MEDENGIVSMFFILAGFIVSWVFVHRWNQRNSKGPKTWPLLGAAVEQLMNYDRMHDWLVNYLSESRTVVVPMPSTTYTYIADPASVEHVLKTNFANYPKG ETYHSYMEVLLGDGIFNVDGDLWRKQRKTASFEFASKNLRDFSTVVFRDYSLKLSSILSQASFNNEAVDMQELLMRMTLDSICKVGFGVEIGTLAPNLPD NQFARAFDTANIIVTLRFIDPLWRIKKLFNVGSEALLDRSMKIINDFTYTVIRRRKAELEEARATGKDNSKVNSKVKHDILTRFIELGEDPESKMTDKSL RDVVLNFVIAGRDTTATTLSWAVYMIMTHKEVAEKLYMELKAFETDRAKEENVTLVPCDDVNVIESFNQRVMQYAGLMNYDSLGKLHYLHAIITETLRLY PAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAALFKPERWLKDGIFQNSSPFKFTAFQAGPRICLGKDSAYLQMKMALAIFCRFYK FSLVPNHPVQYRMMTILSMAHGLKLKTTRCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	6.9	0.9191
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	9.7	0.9166
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	10.4	0.8639
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	12.8	0.9083
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	12.8	0.8996
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031778 [exp]	12.8	0.8909
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	13.0	0.8388
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	14.8	0.8918
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	15.4	0.8184
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	15.5	0.9078

Compare expression of checked genes

Lus10036772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.