Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26761 414 / 5e-142 Arabinanase/levansucrase/invertase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037153 [exp] 720 / 0 AT1G26761 449 / 6e-156 Arabinanase/levansucrase/invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089800 [exp] 489 / 6e-171 AT1G26761 469 / 4e-163 Arabinanase/levansucrase/invertase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036775 pacid=23171271 polypeptide=Lus10036775 locus=Lus10036775.g ID=Lus10036775.BGIv1.0 annot-version=v1.0 ATGGATATGAAGGCGGCATCATCACCATCAGCTTCAACGTTAAGAACAGTAAGCATCCACTCCATAACCTCCTTCACTCACCGCCACTCAACTTTCTTCA ACAGCCCAACAAAAAGACCCAATCTTTACTTTCTCAGCCTTCGCTCTCGCTGTTCAACAAAGCCAGACACCAGCATTTCAGCCGGTCAGAATCGGACTCC CGATGAACAAGAACCCAATTCCGCCCCACTGAAGCAAAACGATGACGTATCCCTCCCCACTTCTCCTCTTCCATTGTCTTCTTCTTCGTCTAGAGTAGGG TTAATCTTTGATCTAGGTCCGCCTGGTTCATGGGACAGCAGCCAAATCGGATCCCCAGTGGTGAAAAGGTTTCTAAGCGACGACGAGGAGAGATGGCTAA TGTGGTACCACGGTACCAATTCCGGCCAAGACGATTCTGATTCTCTTGGGTTAGCAGTTTCCAGCAATGGGGTTCACTGGGAGAGAGGGTTTGGCCATGT CAGCTCGCCTGCTGATGTAGGTCTGGTGATGAGCTCTAGCCAAGATTGGTGGTCGTTTGATACTGTCGGAATTCACCCTGGTGAAGTAGTTGTGATGTCA AGCTCAAAGGTGAAAGCTTCCAGTGCAGTCTACTGGCTTTACTACACTGGTATCAATTCCGAAAAGGTTGAATCTTTGAATGTTCTTAGGTCTTTACCTG GCTTGGCAATAAGTCAGGATGGAAGGCATTGGGCGAGAATTGAAGGTGATCACCACAGTGGAGCATTGTTCGATGTGGGTAATGAAGGAGAGTGGGATTC TCTGTTCATTGCTGGTCCACAAGTTGTGTTCCATGGGAGTGGAGATTTGAGAATGTACTATCACTCCTTTGATGCTGAAAAGAAACAGTTCTGCATTGGG ATGGCAAGGTCAAGAGATGGGATCAAATGGGTGAAGCTAGGGAAGATCCTAGGAGGAGGAAGGTTTGGTTCTTTCGACGAGCTTGGTGTTCTGAATGCGA GTGTCGTCAGGAACAAGAGAGATGGGAGCTACACGATGGCGTACGAAGGCGTTTCGAAGAATGGTGGCGGGAAGATGATCAGGAGCATTGGGATGGCGGT TTCTGGTGATGGGTTGAGAGATTGGAAGAGGGTGAAAGAATATGAAGGTGTTTGGATGAGAGGGTCAGAGGAGGAGGATGGATTGTCATGGGATGGTGGT GGAGTTGGGTCTCCTTGTTTGGTGCAGATGGATGGTGAAGTTGATGAATGGAGGCTGTATTACTGTGGAGTTGATAGTGATGGAAAGACTGGGATTGGAA TGGCAGTCTCAAATGGTAATGATATCAGTTGTTTCAGAAAGTGGACCGGGTTGTCTTTTGTAAACCAGTGA
AA sequence Show only first row Show all	>Lus10036775 pacid=23171271 polypeptide=Lus10036775 locus=Lus10036775.g ID=Lus10036775.BGIv1.0 annot-version=v1.0 MDMKAASSPSASTLRTVSIHSITSFTHRHSTFFNSPTKRPNLYFLSLRSRCSTKPDTSISAGQNRTPDEQEPNSAPLKQNDDVSLPTSPLPLSSSSSRVG LIFDLGPPGSWDSSQIGSPVVKRFLSDDEERWLMWYHGTNSGQDDSDSLGLAVSSNGVHWERGFGHVSSPADVGLVMSSSQDWWSFDTVGIHPGEVVVMS SSKVKASSAVYWLYYTGINSEKVESLNVLRSLPGLAISQDGRHWARIEGDHHSGALFDVGNEGEWDSLFIAGPQVVFHGSGDLRMYYHSFDAEKKQFCIG MARSRDGIKWVKLGKILGGGRFGSFDELGVLNASVVRNKRDGSYTMAYEGVSKNGGGKMIRSIGMAVSGDGLRDWKRVKEYEGVWMRGSEEEDGLSWDGG GVGSPCLVQMDGEVDEWRLYYCGVDSDGKTGIGMAVSNGNDISCFRKWTGLSFVNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	0	1
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	2.8	0.9325
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	3.0	0.9300
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	5.8	0.9314
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	7.7	0.9243
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	9.2	0.9226
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10021663 [exp]	9.5	0.9241
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	10.6	0.9275
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	11.6	0.8844
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	13.3	0.8632
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	13.5	0.9120

Compare expression of checked genes

Lus10036775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.