Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 628 / 0 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 626 / 0 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 551 / 0 FUT7 fucosyltransferase 7 (.1) AT1G14080 534 / 0 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14100 528 / 0 FUT8 fucosyltransferase 8 (.1) AT2G15390 497 / 4e-171 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 478 / 9e-164 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 470 / 4e-162 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 457 / 1e-156 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 399 / 6e-133 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037152 [exp] 835 / 0 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 493 / 4e-169 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 432 / 1e-145 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 426 / 4e-143 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 418 / 7e-140 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10026128 [exp] 374 / 2e-123 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 358 / 2e-117 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 353 / 2e-115 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 335 / 1e-107 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090000 [exp] 748 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 534 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 520 / 4e-180 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 513 / 3e-177 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 514 / 7e-176 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 501 / 3e-171 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 485 / 8e-165 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036776 pacid=23171017 polypeptide=Lus10036776 locus=Lus10036776.g ID=Lus10036776.BGIv1.0 annot-version=v1.0 ATGGATCCTAATCCTCACAAGATGCGGAAGCGACTCCCTTCTCCGAACCCTCCTTCCGATCGCAACTCCGCTTCACCCACCGCCGCCAAGCGATTCGGAT CCACCGCCGCCACGAGCGTTAGCAAAGTAGTTGCAGCTCTCATGGTCGCCTTACCGGTGATCTTCCTTCTTTCGATTATATTCCGGCATACCAAGTCCGA TCTCACCCTCGGATTCGCCGACGCCAGAGTACTCGGCCGGGACAATGACGTCGTTTCGCTGAAGGAAGTTGTTCATGGTGCTCAGTGGAACGCCACACTT CCAGGTTCAGAAGATGTGACATTCCAACAATCCAAGAACACTGCTGGCGACAAGCTTCTAGGTGGACTTCTAGCAGCCGGTTTCGAGGAATCCACTTGTG CTAGTCGGTACGAGTCGTATCTATATCGAAAAGAAAGGCACCGTAAGCCGTCTCCATATCTGATTTCGAAGCTCAGACGCTACGAGGAGCTCCACAAGCG ATGTGGACCGAACACCGAGTCGTACATTAAAGCAGTTGAGTTGCTGAGGATGGATAAGAATGTTGTTGATTCTTCAGATTGTAAGTACGTTGTGTGGGTT TCCTACAGCGGGTTGGGAAACCGGATACTGTCCATAGCTGCAACGTTCCTCTATGCTCTTTTAACAGATAGAGTGATGCTGGTTGATCAAGGGAAGGACA TGAAGGACCTCTTCTGTGAGCCCTTTCCGGAGAATTCGTGGCTGCTGCCGCTGGATTTCCCGCTCACTAAGAAGTTTGATGGGTTCGGTCAGGGGCACGA TCGATGTTACGGTAAGATGCTGAAAGATAAAGCTGTGAACTACTCAGCTGAGTCAGTTCCGTCTTATGTATATCTACATGTTGCACATGACTATGATGCT GAGGATAAACTATTCTTCTGCGACGATGATCAGTCTCTACTCGCCAAAGTCCCGTGGTTGGTGATGAGGACTGATAACTACTTCGTACCCTCACTCTTCC TAATTGATGCTTATGAACACGAACTAGGGAAGATGTTTCCCGAGAAAGGAGCAGTCTTTCACCATATAGGACGGTATCTTTTCCACCCGACAAATGTCGT GTGGGGACTCATCACACGGTACTACCGAACTTACCTAGCAAAGGCTGATGCCAGTGTCGGAATTCAGGTTCGAGTTTTCGATCCGAGGCCTGGACCGTTC AAGCATGTAACGGAACAGATCAGAGCTTGTACTTTGGATCAGAATCTCTTGCCTCATATCGACTCGAACTCGAAAGCAACAGCCTTTGCATCATCCGAAA GTGCGAAATCGACAGCGATACTGTTGACATCGCTCAAGTCTGACTACTCGGACGATTTGAGGAACATGTACTGGGAGCATCCGACCACAACGGGAGAAGT GGTGGGGGTTTATCAACCGAGTCACGAGGAGTTCCAGCAGACGGAGAAGCGGATGCCCAACCGAAAGGCGTGGGCCGAAATGTACCTCCTCAGTTTGATG GATAATTTGGTGACAAGTGCATGGTCGACTTTCGGATACGTTGCTCAAGGTTTAGGAGGTGTGAGGTCGTGGATCCTCACGAAGACTGAGAACGACACGG TTCCAGACCCACCGTGTCGACTGGCCATGTCAATGGACCCTTGCTTTCACGCGCCTCCGTTGTATGACTGCAAGGAGAAGAGAGGGACGGATACAGGTGC TCTTGTTCCTCATGTGAAGCATTGTGAGGATGTAAGCTGGGGAGTCAAAGTGATTGATGCTGGACACGGTGAGATGTAA
AA sequence Show only first row Show all	>Lus10036776 pacid=23171017 polypeptide=Lus10036776 locus=Lus10036776.g ID=Lus10036776.BGIv1.0 annot-version=v1.0 MDPNPHKMRKRLPSPNPPSDRNSASPTAAKRFGSTAATSVSKVVAALMVALPVIFLLSIIFRHTKSDLTLGFADARVLGRDNDVVSLKEVVHGAQWNATL PGSEDVTFQQSKNTAGDKLLGGLLAAGFEESTCASRYESYLYRKERHRKPSPYLISKLRRYEELHKRCGPNTESYIKAVELLRMDKNVVDSSDCKYVVWV SYSGLGNRILSIAATFLYALLTDRVMLVDQGKDMKDLFCEPFPENSWLLPLDFPLTKKFDGFGQGHDRCYGKMLKDKAVNYSAESVPSYVYLHVAHDYDA EDKLFFCDDDQSLLAKVPWLVMRTDNYFVPSLFLIDAYEHELGKMFPEKGAVFHHIGRYLFHPTNVVWGLITRYYRTYLAKADASVGIQVRVFDPRPGPF KHVTEQIRACTLDQNLLPHIDSNSKATAFASSESAKSTAILLTSLKSDYSDDLRNMYWEHPTTTGEVVGVYQPSHEEFQQTEKRMPNRKAWAEMYLLSLM DNLVTSAWSTFGYVAQGLGGVRSWILTKTENDTVPDPPCRLAMSMDPCFHAPPLYDCKEKRGTDTGALVPHVKHCEDVSWGVKVIDAGHGEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	0	1
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10023043 [exp]	1.4	0.8625
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	5.5	0.8595
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	6.3	0.8444
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	9.5	0.8550
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	10.0	0.8505
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	11.2	0.8378
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	12.3	0.8320
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	12.4	0.8319
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	16.5	0.8348
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	18.7	0.8246

Compare expression of checked genes

Lus10036776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.