Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037149 [exp] 150 / 7e-45 ND 40 / 3e-04 Lus10037151 [exp] 107 / 1e-27 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1) Lus10028649 [exp] 73 / 5e-14 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10028722 [exp] 67 / 5e-12 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10011267 [exp] 61 / 2e-10 ND 39 / 0.002 Lus10021237 [exp] 53 / 6e-08 ND / Lus10018863 [exp] 51 / 3e-07 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10003089 [exp] 49 / 1e-06 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004525 [exp] 41 / 0.0008 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036778 pacid=23171063 polypeptide=Lus10036778 locus=Lus10036778.g ID=Lus10036778.BGIv1.0 annot-version=v1.0 ATGAACTGCCCCTTGCTTGAAGAGTTAGCTCTGCAGGATGCCTCTTCGTCAAGCAACCTCAGGGTTGCGGGATCCCCTGCATTGAAGTACTTGGAAGTAA CCCACTGCCGTCCCCTTTCCACCATGAGGATTGATCACGCTCCTAGCCTTATCCACCTTACATATCATGGTGAGTGGGAGGGGGTGAGTGTTCAGAACTG TCCATCTCTGATGAATGTCGACATAGCTTCTAGTGATTGGAGTTCGCCTCATTTAGCGTTCAATTCCCTTTCCGCTTATGCCGGTCAGCTCGAGTCTCTT TCGTTGGTGATCGACCCTTTCACCGTGTACTTTCCTGCTACGTACGAACTCGGCTCAGTTGAGCAACTGAGGATCCGAGTAATTGGAGCAAAATCTAATC ATACTTTGGCGTGTTGTGTAATGAGCACTTTACCCCTGATTGGGACTATTGCATCAAATTTCCAACTGGTTTGTCTAATATCAAAGTTGGCTCTGCACAA TGCCTCTTCACTACATAGACTCATTATGGTGGGATCCCCATCATTGAAGTACTTGGAAGTAATCAGCTGCCCTCGCCTTTCCTCCATGAATATTGATAAT GCTCCTAGCCTTACCCGGGTTGTTTATCGTGGTCTATGGGCCGGTGTGAGTTTCGAGAACTGTCCATCTCTTGTGGATGTGAACGTATCTTATGAACACG AGTCATCTGAATTTGCGTTTGATTCCATTTCCCCTTATGCCGGTCTGCTCGAGTCTCTTTCCTTGGAGATTGACCCTTACAATCTGGACGGGTGTGCGTA TGAGAATAGAGTCATCGAACCACTTGGTGCCGTACCTTGCGAGAGCGTCAAAGTAGTGGAGATTTCCAATTTTAATGGCTACGATCTCGAATATGAGTTT CTGCTGTAA
AA sequence Show only first row Show all	>Lus10036778 pacid=23171063 polypeptide=Lus10036778 locus=Lus10036778.g ID=Lus10036778.BGIv1.0 annot-version=v1.0 MNCPLLEELALQDASSSSNLRVAGSPALKYLEVTHCRPLSTMRIDHAPSLIHLTYHGEWEGVSVQNCPSLMNVDIASSDWSSPHLAFNSLSAYAGQLESL SLVIDPFTVYFPATYELGSVEQLRIRVIGAKSNHTLACCVMSTLPLIGTIASNFQLVCLISKLALHNASSLHRLIMVGSPSLKYLEVISCPRLSSMNIDN APSLTRVVYRGLWAGVSFENCPSLVDVNVSYEHESSEFAFDSISPYAGLLESLSLEIDPYNLDGCAYENRVIEPLGAVPCESVKVVEISNFNGYDLEYEF LL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036778 [exp]	0	1
					Lus10014748 [exp]	4.6	0.8695
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	6.5	0.8695
					Lus10008258 [exp]	7.6	0.6517
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	7.9	0.8695
					Lus10023108 [exp]	9.2	0.8695
					Lus10024321 [exp]	10.2	0.8695
AT2G46530	ARF	ARF11	auxin response factor 11 (.1.2...		Lus10030240 [exp]	11.2	0.8695
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	12.1	0.8695
					Lus10033059 [exp]	13.0	0.8695
					Lus10000351 [exp]	13.7	0.8695

Compare expression of checked genes

Lus10036778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.