Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03240 918 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 855 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 847 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 794 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 749 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 740 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 682 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 668 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 607 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 382 / 1e-120 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037147 [exp] 1365 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 1111 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 1043 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 991 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 935 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 622 / 0 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 559 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 499 / 3e-168 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037146 [exp] 440 / 9e-149 AT4G25350 369 / 2e-121 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 1042 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 1011 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 1004 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 998 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 891 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 870 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 501 / 9e-167 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 378 / 6e-119 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 373 / 3e-117 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 362 / 5e-113 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10036779 pacid=23171011 polypeptide=Lus10036779 locus=Lus10036779.g ID=Lus10036779.BGIv1.0 annot-version=v1.0 ATGAAGTTTGGCAAGGAATTTGCATCACAGATGGTGCCGGAATGGCAGGAGGCGTACATGGATTACGATTACCTCAAGACCCTTCTGAAGGAGGTGTTAA GGTTCAGGCAAAGGAACAGCAGCAGCAAACCTGCTTCTGCTCAATCCAGTCCAGTTGGTGGTTTGAAGAGGAAGCTGACTCTTTACAGGGCTTTCAGTGG ATTGACGCAGAGAGCCAACAATTTTGACAACAACAGAAAAAATGACATTGAGAATCAGGCGATTCTAGTGAGTTCTGTGAATCAGAATGGTTCTCAGAGC TACCAGACAGCGTTCCTGATGGCTTCCGATGAAGGTGGAGAGTATGAGCTGGTCTACTTCAGAAGGCTGGATGATGAGTTCAATAAAGTGAACAGCTTTT ACAAGAGCAAAGTAGATGAGGTTTTGAAAGAGGCTGATACCTTGAACAAGCAGATGGATGCTTTGATTGCTTTTCGGATCAAGGTTGAAAATCCGGCCGG TTGGTCTAGTGGCGATCGGACGAAGCAGTTGACTCGGCTGGCCTCTGATGTTGCTGTTTCTGCTGCTGCATTGGATGCCACCACTCCTAAAGGAGCCAAA GCTGGCAAGAAAGTTCATTTCATGGATGTGATTGAGGAAGGATCGAGCAGTCATGAACGGTCGTCTTCAGATGGATCAAGCTACGAGGTAGACGAGCAGG AAGAGATTAAGAAGAAGAGAAGTGGAGAAAATGTGAATGGAAATGATAGCAAGGTAAAGGAGGTGAATGTGCAGATACCAGCTCAGCTGGAGGTACTAAA CCATGTGCATATGAACTGCATTCCAGAGACTCCTCGAGACACCATTAAAGGCTTCCTCAATGTTCCTGAGCACACCAAACTCAAATTCACAAGGGGAAAC CTCAGGAAAGTTGAAGAGCAGCTGAAGCGAGCTTTCATCGAGTTCTATCATAAGCTTCGCCTTCTTAAGAGCTACAGCTTCTTGAACACGCTAGCCTTTG CAAAGATCATGAAGAAGTATGATAAGATTACATCAAGAGGTGCATCAAAAGCTTACATGAACATGGTGGATAACTCCTACCTAGGCAGTTCAGAAGAGGT TACCAAGCTGATGGAGAGGGTTGAAGCTACATTCATCAAGCATTTCTCCAATGCAAATCATCGCAAGGGAATGAGCATCTTGAGGCCAATAGCTAAAACG GAAAGGCACAGGACAACATTTACCATGGGTTTTTTCTGTGGTGGCATTGCAGCCCTTATTATAGCCATATCCTTGATCATTAGAGCTCGAAATATCATGA ATATGCCCGGCAGACTCCAGTACATGGAAACCATGTTTCCACTTTACAGCTTGTTTGGATTCATCGTTCTGCACATTGTCATGTACGCTGCAAATATTTA TTTGTGGAAGCGATTCCGGGTGAACTATTCCTTCATTTTTGGGTTCAAATCTGGGACTGAATTAGGCTTCCGGCAAGTCCTCCTTGTGGCTTTCGGAATT GCAGTCCTGGCACTTTGCAGTGTACTCTCAAACCTAGACATGGAAATGGACCCTCTGACAAAGGATTATCAAGCCTTTACTGAGCTCGTCCCTCTAGGCT TGATTACTCTGCTCCTGATCATATTGTTCTTACCATTCAACATCCTGTATCGCTCTTCTCGCTTCTTTTTCCTCACATGTATCTTCCACTGCATAGCTGC TCCCCTCTACAAGGTCAACTTACCAGATTTCTTCTTAGCAGATCAACTAACCAGCCAGGTGCAAGCGATCAGAAGTCTCGAGTTCTATGTCTGCTACTAT GGTTGGGGCGACTTTAAACGTAGGGAAAACACCTGCAGAAGTAGCGGTGTATACAACACGTTCTATTTCATTGTCGCGGTGATCCCATTCCTGGCTCGCC TCCTTCAGTGCCTTCGTCGGTTGTTTGAAGAGAAAGACCCCGCGCAAGGGCTCAACGGGTTGAAGTACTTCATAACAATATTAGCAGTCACGATGAGAAC AGCTCACAGTTTAAACATAGGGGTTGGTTGGAGGTTAATAGCTTGGGTGTTCTCCGCCGCTGCAGCCATTTTTGGCACTTACTGGGACCTTGTTCATGAT TGGGGTCTCCTCCAGCCTCATTCCAAGAACTGGCTTCTCAGAGACAAACTCATTCTCCCCTACAACAGTGTGTATTACGTGGCAATGGTGGTCAATGTGT TGCTGAGATTCGCTTGGCTGCAGACAGTGCTGAACTATAACTTCACCTTCCTGCACAGGCAAACATTGGTTGCTATTGTTGCAAGCTTGGAGATCATTCG CCGTGGCATCTGGAACTTCTTCAGGTTAGAGAATGAGCATCTTAACAATGTAGGGAAATTCCGAGCGTTCAAATCAGTACCATTGCCATTCAACTACGAC GAAGACGATGACAAAGATGAATAG
AA sequence Show only first row Show all	>Lus10036779 pacid=23171011 polypeptide=Lus10036779 locus=Lus10036779.g ID=Lus10036779.BGIv1.0 annot-version=v1.0 MKFGKEFASQMVPEWQEAYMDYDYLKTLLKEVLRFRQRNSSSKPASAQSSPVGGLKRKLTLYRAFSGLTQRANNFDNNRKNDIENQAILVSSVNQNGSQS YQTAFLMASDEGGEYELVYFRRLDDEFNKVNSFYKSKVDEVLKEADTLNKQMDALIAFRIKVENPAGWSSGDRTKQLTRLASDVAVSAAALDATTPKGAK AGKKVHFMDVIEEGSSSHERSSSDGSSYEVDEQEEIKKKRSGENVNGNDSKVKEVNVQIPAQLEVLNHVHMNCIPETPRDTIKGFLNVPEHTKLKFTRGN LRKVEEQLKRAFIEFYHKLRLLKSYSFLNTLAFAKIMKKYDKITSRGASKAYMNMVDNSYLGSSEEVTKLMERVEATFIKHFSNANHRKGMSILRPIAKT ERHRTTFTMGFFCGGIAALIIAISLIIRARNIMNMPGRLQYMETMFPLYSLFGFIVLHIVMYAANIYLWKRFRVNYSFIFGFKSGTELGFRQVLLVAFGI AVLALCSVLSNLDMEMDPLTKDYQAFTELVPLGLITLLLIILFLPFNILYRSSRFFFLTCIFHCIAAPLYKVNLPDFFLADQLTSQVQAIRSLEFYVCYY GWGDFKRRENTCRSSGVYNTFYFIVAVIPFLARLLQCLRRLFEEKDPAQGLNGLKYFITILAVTMRTAHSLNIGVGWRLIAWVFSAAAAIFGTYWDLVHD WGLLQPHSKNWLLRDKLILPYNSVYYVAMVVNVLLRFAWLQTVLNYNFTFLHRQTLVAIVASLEIIRRGIWNFFRLENEHLNNVGKFRAFKSVPLPFNYD EDDDKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	1.0	0.9686
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	3.7	0.8504
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	3.7	0.9053
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10001076 [exp]	6.0	0.8290
					Lus10011661 [exp]	6.0	0.8580
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	7.9	0.8637
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	8.4	0.8264
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	10.0	0.8151
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	11.2	0.8523
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10027880 [exp]	12.3	0.8029

Compare expression of checked genes

Lus10036779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.