Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14030 607 / 0 Rubisco methyltransferase family protein (.1) AT3G07670 105 / 5e-24 Rubisco methyltransferase family protein (.1) AT3G55080 71 / 8e-13 SET domain-containing protein (.1.2) AT5G14260 62 / 5e-10 Rubisco methyltransferase family protein (.1.2.3) AT2G18850 50 / 3e-06 SET domain-containing protein (.1.2) AT1G24610 47 / 3e-05 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012309 [exp] 105 / 4e-24 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 92 / 9e-20 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 66 / 3e-11 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10022333 [exp] 61 / 1e-09 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 59 / 4e-09 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10021783 [exp] 56 / 4e-08 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10013825 [exp] 53 / 3e-07 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10026538 [exp] 51 / 2e-06 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10016435 [exp] 50 / 3e-06 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090500 [exp] 633 / 0 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G169300 [exp] 107 / 1e-24 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 77 / 1e-14 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.017G066500 [exp] 63 / 2e-10 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.004G135700 [exp] 48 / 1e-05 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.004G081400 [exp] 45 / 7e-05 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.014G077700 [exp] 44 / 0.0003 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10036780 pacid=23171123 polypeptide=Lus10036780 locus=Lus10036780.g ID=Lus10036780.BGIv1.0 annot-version=v1.0 ATGGCGACTTTCTTCTCCATCTCCACTTCATTTCCGTCCCCTTCAAAACGAAAACCCAACCTTGCATCAATTCGCGCCACTGCAGCACTCCAATCAGCGG CGACGGCGAAATCAGCAGCGCCGCCGCCGGCGGTCGCCACCTTCTGGGAATGGCTGACAGAGCGAGGGATAGTCTCCGCGAAGACTCCGGTGAGGCCTGG CATCGTCACGGAAGGTCTGGGTCTGGTGGCGAAACGGGACATAGGAAGAAACGAGGTCGTATTGGAAGTTCCCAAGAAGTTCTGGATCAACCCTACTTCC GTCGAGGGATCTGAAATTGGGCGATTCTGCGGCGGGTTGAAGCCATGGATATCGGTGGCTCTGTTCTTGATCAGGGAGAAGTTGAAGGCTGAGGGTTCGG ATTGGAAGGCTTATCTTGATGTACTTCCGGAAGCAACCGATTCCACTCTGTTTTGGTGGCGCAGGTCAGAAGAGGAGCTTGCAGAGCTTCAAGGAACTCA ACTGCTGAACACAACCCTGGGAGTTAAGCAGTATCTACAGAGAGAGTTTCAGAGGGTTCAAGAAGATATTTTGGAGCCATACAAGCAGATGTTTCCTTCC AATGTGACACTGGAGGATTTCACTTGGGCATTCGGGATCCTCAGATCTCGAGCATTCTCGCGACTTCGTGGCGAAGATCTTGTTCTCATCCCTCTTGCAG ACTTGATCAATCATAGTCAAGATATTACGACAGAAGATTACGCGTACGAGATTAAAGGAGCCGGCATTTTCTCTAGGGATCTTTTGTTCTCTTTGAGATC TCCTATTCCAGTCAAGGCTGGTGAGCAGGTTGTTATCCAGTATGACCTAAACAAGAGTAATGCAGAACTTGCTCTAGACTATGGATTCGTGGAATCGAAA CCTGACCGGAACGTCTATACTTTAACCCTCCAGATCTCCGAGGAGGACCAATTTGTTGGAGACAAGCTCGACATTGCTGAGACGAACGGCATGGGAGAGA CTGCCGATTTCGACATCATCTTAGGCTACCCTCTACCAACGAAACTGCTACCCTACTTGCGCCTGGTCGCACTTGGAGGTACCGATGCCTTCCTCTTGGA GTCAATCTTCAGGAACACAATCTGGGACCATCTCCAGCTGCCAATTAGCCGAGCCAATGAGGAGCTCATCTGTCGCGTGGTTCGAGATGCTTGCAAATCT GCTCTTTCTGGCTTTCACACCACTGTCGAAGAGGATGATGAGAAGTTGTTGGAAGGGCAAGATTCGAGTCCTCGAGTTCGGATTGCTGTGGGGATAAGAT CAGGAGAGAAGAAGGTTCTGCAGCAAATCGATGAGTTTTTCAAGCAGATAGAGGATGAACTGGATGAGATCGAGTACTATCAAGAACGAAGACTCAAGGA TCTCGGCCTGGTTGGCGAACAAGGTGATATCATTTTCTGGGAGTAA
AA sequence Show only first row Show all	>Lus10036780 pacid=23171123 polypeptide=Lus10036780 locus=Lus10036780.g ID=Lus10036780.BGIv1.0 annot-version=v1.0 MATFFSISTSFPSPSKRKPNLASIRATAALQSAATAKSAAPPPAVATFWEWLTERGIVSAKTPVRPGIVTEGLGLVAKRDIGRNEVVLEVPKKFWINPTS VEGSEIGRFCGGLKPWISVALFLIREKLKAEGSDWKAYLDVLPEATDSTLFWWRRSEEELAELQGTQLLNTTLGVKQYLQREFQRVQEDILEPYKQMFPS NVTLEDFTWAFGILRSRAFSRLRGEDLVLIPLADLINHSQDITTEDYAYEIKGAGIFSRDLLFSLRSPIPVKAGEQVVIQYDLNKSNAELALDYGFVESK PDRNVYTLTLQISEEDQFVGDKLDIAETNGMGETADFDIILGYPLPTKLLPYLRLVALGGTDAFLLESIFRNTIWDHLQLPISRANEELICRVVRDACKS ALSGFHTTVEEDDEKLLEGQDSSPRVRIAVGIRSGEKKVLQQIDEFFKQIEDELDEIEYYQERRLKDLGLVGEQGDIIFWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	0	1
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	3.0	0.9535
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	3.2	0.9488
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	5.3	0.9323
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	5.5	0.9400
AT3G23760			unknown protein		Lus10032527 [exp]	5.7	0.9270
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	5.7	0.9385
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	8.3	0.8826
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	8.9	0.9379
AT2G40070			unknown protein		Lus10035528 [exp]	9.7	0.8745
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	11.0	0.9360

Compare expression of checked genes

Lus10036780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.