Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 539 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 513 / 4e-178 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 510 / 6e-177 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 507 / 1e-174 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 488 / 2e-168 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 459 / 5e-157 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 451 / 7e-153 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 426 / 2e-143 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 418 / 2e-140 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 268 / 5e-83 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037147 [exp] 611 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 604 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 599 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 542 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 503 / 2e-173 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 484 / 2e-166 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 465 / 1e-163 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 357 / 4e-119 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 328 / 7e-111 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 547 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 532 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 530 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 528 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 517 / 2e-179 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 466 / 4e-159 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 336 / 5e-109 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 277 / 2e-86 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G069000 [exp] 275 / 2e-85 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 275 / 3e-85 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10036781 pacid=23171161 polypeptide=Lus10036781 locus=Lus10036781.g ID=Lus10036781.BGIv1.0 annot-version=v1.0 ATGAAGAAGCCCGGGAGGCTCCAGTACATGGAAACCATGTTTCCACTTTACAGCTTGTTTGGATTCATTGTTCTGCACATTGTTATGTATGCTGCAAATA TCTACTTCTGGAAGCGATTCCGGGTGAACTATTCATTCATTTTCGGGTTCAAATCCGGGACCGAACTTGGCTACAGGCAAGTCCTCCTTGTGGCTTTTGG AATTGAAGTCCTAGCACTTTGCAGTGTGCTCTCAAACCTAGACATGGAAATGGACCCTTTGACAAAGGATTGCCAAGCCTATACCGAAAGAATCCCTCTC GGCTTGATTATTCTGCTTCTGATCATATTGTTCTTATCATTGAACATCTTGTATCGCTCTTCTCGCTTTTTCTTACTTACATGTATCTTCCATTGCATAG CTGCTCCCCTCTACAAGGTCACATTCTCCGATTTCTTCTTGGCAGACCAACTAACCAGTCAGGTGCAAGCCATCAGAAGTCCTGAGTTCTACATCTGCTA CTATGGCTCGGGCGACTTCAAACGAAGGGAAAACACTTGCAAGAGTAGTAGTGTATACAACACGTTCTATTTCATCGTGGCTGTGATTCCATACGTGGCG CGCCTCCTTCAGTGCCTTCGTAAGTTGTTTGAAGAGAAAGACGGCAAGCAAGGCCTCAATGGGTTGAAGTACTTGGCAGCGATAGTAGCAGTCCCAACGA GAACAGCTCACAGTTTAAACAGAAGGATCGATTGGTTTTCCGTAGCTTGGGTCTTCTCCACCATTGCAACCATTGGTGGCACTTACTGGGACCTCGTACA CGATTGGGGTTTCCTCCAGCCCCGTTCGAAGAACCGGTTTCTCAGAGACAAACTCATTCTCCCCTTCAAAAGTGTGTATTACGTAGCGATTGTGCTTAAC GTGTTGCTGAGATTTGCTTGGCTGCAGACAGTGCTGAACTATAACTTCACCTTCCTGCATAGGCAGACATTGATTGATATTTTTGCAAGCCTGGAGATCA TTCGCCGTGGCATCTGGAACTTCTTTAGGTTAGAGAATGAGCATCTTAACAATGCAGGGAAATTCCGAGCGTTCCAATCAGTACCATTGCCATTCAACTA CGATGAAGATGATGAAAAAGATGTGTAG
AA sequence Show only first row Show all	>Lus10036781 pacid=23171161 polypeptide=Lus10036781 locus=Lus10036781.g ID=Lus10036781.BGIv1.0 annot-version=v1.0 MKKPGRLQYMETMFPLYSLFGFIVLHIVMYAANIYFWKRFRVNYSFIFGFKSGTELGYRQVLLVAFGIEVLALCSVLSNLDMEMDPLTKDCQAYTERIPL GLIILLLIILFLSLNILYRSSRFFLLTCIFHCIAAPLYKVTFSDFFLADQLTSQVQAIRSPEFYICYYGSGDFKRRENTCKSSSVYNTFYFIVAVIPYVA RLLQCLRKLFEEKDGKQGLNGLKYLAAIVAVPTRTAHSLNRRIDWFSVAWVFSTIATIGGTYWDLVHDWGFLQPRSKNRFLRDKLILPFKSVYYVAIVLN VLLRFAWLQTVLNYNFTFLHRQTLIDIFASLEIIRRGIWNFFRLENEHLNNAGKFRAFQSVPLPFNYDEDDEKDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036781 [exp]	0	1
					Lus10033100 [exp]	10.6	0.6910
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	16.0	0.6445
AT3G46750			unknown protein		Lus10004979 [exp]	29.0	0.6688
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	36.9	0.6329
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	39.1	0.6492
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	68.8	0.6686
AT1G11410			S-locus lectin protein kinase ...		Lus10007610 [exp]	92.8	0.6463
AT5G57510			unknown protein		Lus10009171 [exp]	103.2	0.6437
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10004224 [exp]	114.8	0.6101

Compare expression of checked genes

Lus10036781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.