Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29060 246 / 1e-74 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 243 / 5e-74 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 240 / 9e-73 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 229 / 2e-68 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 199 / 3e-57 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 174 / 2e-48 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 168 / 3e-46 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 134 / 2e-34 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 134 / 3e-34 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 100 / 8e-23 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037147 [exp] 306 / 3e-97 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 261 / 4e-80 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 231 / 1e-68 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 225 / 6e-67 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 222 / 1e-65 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031081 [exp] 202 / 3e-63 AT1G14040 191 / 9e-56 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037146 [exp] 197 / 4e-60 AT4G25350 369 / 2e-121 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 203 / 9e-59 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10035467 [exp] 122 / 2e-34 AT1G14040 111 / 6e-30 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 205 / 2e-59 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 204 / 4e-59 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 204 / 5e-59 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 197 / 2e-56 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 166 / 3e-45 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 159 / 4e-43 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 134 / 3e-34 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165400 [exp] 107 / 3e-27 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 102 / 1e-23 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 102 / 2e-23 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10036782 pacid=23170988 polypeptide=Lus10036782 locus=Lus10036782.g ID=Lus10036782.BGIv1.0 annot-version=v1.0 ATGAAGTTTGGCAAGGAATTTGCATCACAGATGGTGCCAGAATGGAAAGAGGCGTACATGGATTATGATTTCCTCAAAACCCTTTTGAAGGAGGTGTTAA GGAACAGCAAAACTGCAATGTACAGGCATTTCAGTGGGTTGACGAAGCAGAGATCCAACAAAAGCTATAACCCGATCGATGGTGTTGGCAAAACCGACAA TTACATCGAGAACCAGGTGATTCTGGTGAGTTCGGTTGATCAGAACAGGTCTCGGAGCTACCAGACGACGTTTCTGATGGCTTCGGACGAAGGTGGAGAG TATGAGCTGGTGTACTTTAGAAGGCTGGATGATGAGTTCAATAAAGTGAACAGCTTTTACAAGAGCAAAGTGGATGAGGTTTTGAAAGAGGCTGATACCT TGAACAAGCAGATGGATGCTTTCATTGCTTTTCGAATCAAGGTCGAGAACCCGACCGGTTGGTCTAGTGGCGATCGGGCGGAGGAGATGTCCCGGCTGGC TTCGGATGTTGCTGCTTCTGCTGCTGCATTGGATGCCACCACTCCTAAAGGAGCCAAAGCAGGCAATGTGATTGAGGAAGGATCATCAAACAGTCATGAA GGTTCGTCTGACAAAATGGAAAAGAAGAATCACAAGATTCACAAGGGGAAACCTCAGGAAAGTCGAAAAGCGCTGAAGCGAGCTTTCGTCGAATTCTACC AGAAGCTCCGCCTTCTTAGGAGCTACAGTTTCTTGAATAGGCTGGCCTTCGCAAAGATCATGGAGAAGTACGATAAGATTACATCAAGAGGTGCATCCAA AGCTTACATGAACAAGGTGGATAAGTCCTACCTAGGCAGTTCAGAAGAGGTTACCAATCTGATGGAGAGGGTTGAAGATGCATTTATCAAGCATTTCTCG AATGCAAATCATCGAAAAGGAATGAGCATCTTGAGGCCAAAAGCTAAAACCGAAAGGCATAGGATATCGTTTACCATGGGTGAGAAATGCTTTCGACACA AGGAACAGTCCATTTCGATCTTTTGTTGCGCTTCCCTAACTCCTCAGTTTGGCAAATCTTTGCAGGTTTGTTCTGTGGTTCCATTGCAGCCATTATTATA G
AA sequence Show only first row Show all	>Lus10036782 pacid=23170988 polypeptide=Lus10036782 locus=Lus10036782.g ID=Lus10036782.BGIv1.0 annot-version=v1.0 MKFGKEFASQMVPEWKEAYMDYDFLKTLLKEVLRNSKTAMYRHFSGLTKQRSNKSYNPIDGVGKTDNYIENQVILVSSVDQNRSRSYQTTFLMASDEGGE YELVYFRRLDDEFNKVNSFYKSKVDEVLKEADTLNKQMDAFIAFRIKVENPTGWSSGDRAEEMSRLASDVAASAAALDATTPKGAKAGNVIEEGSSNSHE GSSDKMEKKNHKIHKGKPQESRKALKRAFVEFYQKLRLLRSYSFLNRLAFAKIMEKYDKITSRGASKAYMNKVDKSYLGSSEEVTNLMERVEDAFIKHFS NANHRKGMSILRPKAKTERHRISFTMGEKCFRHKEQSISIFCCASLTPQFGKSLQVCSVVPLQPLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	0	1
					Lus10004148 [exp]	5.3	0.8984
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	13.0	0.9303
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	13.6	0.8896
AT3G06070			unknown protein		Lus10034044 [exp]	15.9	0.9009
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	19.1	0.9198
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	20.6	0.8574
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	24.5	0.8922
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	25.3	0.8930
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	25.3	0.9087
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	32.2	0.9050

Compare expression of checked genes

Lus10036782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.