Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26560 1689 / 0 ATP-dependent RNA helicase, putative (.1) AT1G32490 809 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 784 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 769 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 710 / 0 RNA helicase family protein (.1) AT2G47250 710 / 0 RNA helicase family protein (.1) AT4G18465 618 / 0 RNA helicase family protein (.1) AT1G26370 597 / 0 RID1 RNA helicase family protein (.1) AT1G27900 560 / 0 RNA helicase family protein (.1) AT4G16680 548 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037145 [exp] 1572 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 783 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 691 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 669 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 563 / 0 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 561 / 0 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 559 / 0 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 555 / 0 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10027147 [exp] 549 / 0 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 1738 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 1695 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 801 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 785 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 719 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 711 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 630 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 609 / 0 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 564 / 0 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 436 / 1e-129 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10036783 pacid=23171270 polypeptide=Lus10036783 locus=Lus10036783.g ID=Lus10036783.BGIv1.0 annot-version=v1.0 ATGGTTACCGCTAAGGACGATGACCTCAAAAAGCTGGAGTATCTGTCCCTCGTCTCCAAAGTCTGCACCGAGCTCGAAACTCATTTAGGAATTGGGGAAA AAGTTGCTGCGGAGTTCATCACCGACATGGGCCGACAGTCCGCCTCCGTCGACGAATTCGATTCCAAGTTAAAGGAGAACAAGTTGGATATGCCGGATTA CTTAATGCGAACTCTTCTTACGATTATTCATGCCATTCTCCCGCCGAAGCCCAAGGTCGAGGAAACCGGGGGAAGAGGTAAGTACAAATCTCTTTCGATT GCTGATGGTAAGGAAAGAGTGAGGCAGATTGAGCAAGAGATTGAGATGGAGGCGAAGGTTATGGTCAAAGATGACAACAGATATGGTGATAGGGATAGGA AGGACAGGGAGAACGGCAGGGATCGAGATAGAGGTAGAGGTAGATATATGGATAAAGAGAGGGATAGAGATAGAGGAGGCCGTGATCGTGATCGTGAACA TGAACGAGAAAGGCACAGAGATAGAGACTATGATACAGGTTATGGTGATGATGATAATGGGAGGCGTGGAGGGAGAGAACGTGATGATTACAGGAATAGG GAAAAGCATAGGGGTAGGGACAGTCATAGAAGGGACGAGGACGACAACCGCGATAATGGTTATGATAGGCAAGATGATGGTGGAGGCGATAGGGCAGGGA GGAACACTGGCCATAGCTCTCAGGAGCCTGAGTTGTATCATGTATATAAAGGGAGGGTGTCCAGGGTTATGGACTCGGGTTGTTTCGTGCAATTGAATGA TTTGAAGGGGAAGGAGGGTCTGGTTCACGTCTCTCAGATTGCAACCAGGAAGATCGGTAACGCAAAGGATGTGATCAAAAGGGACCAGGAAGTTTTTGTG AAGGTGATTTCTGTGTCAGGGCAGAAGTTGTCTCTTTCGATGAGAGACGTGGACCAGCATACAGGGAGGGATCTGCTTCCGCTGAAGAAGAGCTCCGATG ATGATTCTCATAGGGCCAATCCTTCAGGTACCAGGGATGGTCCCAGAGCTCGCACAGGCTTGTCAGGGATCAGGATTGTGGAAGAAGATGACGCTATTCC ATCTCGGCGGCCACTAAAGAGGATGAGTTCACCAGAAATATGGGAAGCTAAGCAGTTGATAGCTTCAGGGGTTCTGAGTGTGAAAGAGTTCCCTATGTAT GATGAAGAAGCAGATGGCCTGCTCTATGAAGAAGAAGGAGCTGAGGAAGAACTTGAAATTGAATTGAACGAAGATGAACCTGCATTTCTGCAGGGGCAAA CTAGGTCTTCGGTTGATATGTCACCAGTGAAGATCTTTAAGAATCCAGAAGGGTCACTGAGTCGTGCAGCTGCTCTTCAGTCTGCCCTTATCAAGGAGAG GAGGGAAGTAAGGGAACAGCAGCAAAGAACAATGCTTGATTCCATACCAAAGGATCTGAATCGTCCTTGGGAAGATCCGATGCCAGAGAGTGGTGAGAGG CATCTGGCCCAGGAACTTAGGGGTGTTGGTTTGTCAGCATACGACATGCCTGAATGGAAGAAGGATGCTTATGGAAAGGCATTGACTTTTGGGCAGAGGT CAAAATTATCACTTCAGGAGCAGCGACAGAGCTTGCCCATTTACAAGTTGAAGAAAGAGTTAGTTCAGGCTGTTCATGATAATCAGGTTCTGGTTGTTAT TGGTGAGACAGGTTCTGGCAAGACTACACAGGTAACCCAGTACCTTGCTGAGTCTGGTTATACCACAAAGGGTAAGATTGGTTGTACTCAACCTCGTAGG GTTGCTGCCATGTCTGTGGCGAAACGTGTTGCTGAAGAGTTCGGTTGTCGCTTAGGAGAAGACGTCGGATATGCCATTCGTTTTGAAGATTGTACTGGGC CTGATACTGTCATCAAGTATATGACTGACGGTATGCTTCTTAGGGAAATCTTGATTGATGAGAATCTCTCTCAATATTCCGTGATAATGCTTGATGAAGC TCACGAGAGAACTATTCACACTGATGTTCTTTTTGGACTTCTTAAGAAGTTGGTCAAGAGAAGACCGGACCTTCGTTTGATTGTCACATCTGCCACCCTG GATGCCGAAAAATTCTCTGGTTACTTTTTCAGCTGTAACATATTCACCATTCCCGGAAGGACATTCCCTGTGGAGATTTTGTACACTAAGCAGCCTGAAA GTGATTACTTAGATGCTGCTCTAATCACCGTCTTACAGATCCACTTGACGGAACCCGAAGGTGATATACTTGTGTTCTTAACGGGACAGGAAGAGATTGA TTTTGCGTGCCAGTGTCTATTTGACCGGATGAAGGCGCTTGGGAAAAATGTTCCAGAATTGATCATATTACCAGTTTACAGTGCCCTTCCTAGTGAAATG CAGTCAAGGATTTTTGATCCAGCTCCTGCAGGCAAAAGGAAGGTGGTTGTGGCAACCAATATTGCAGAGGCATCGTTGACTATTGATGGGATATTTTACG TCATTGACCCTGGCTTTGCTAAGCAGAATGTATACAATCCAAAGCAAGGTCTTGATTCTTTGGTCATCACTCCCATCTCACAAGCATCCGCTAAGCAAAG AGCTGGACGTGCCGGGCGTACCGGTCCGGGGAAATGTTACCGTCTTTACACGGAAAGTGCCTACCGGAACGAGATGTCCCCTACCTCTGTTCCAGAAATC CAAAGAATCAATCTTGGGATGGTAACGCTTACAATGAAGGCCATGGGAATCAATGATCTCTTATCTTTTGATTTCATGGACCCTCCATCACCTCAAGCCC TGATCTCCGCCATGGAGCAGCTCTACAGTCTAGGCGCTTTGGATGAGGAAGGACTACTTACTAAATTGGGGAGGAAAATGGCCGAGTTTCCTCTCGACCC TCCACTGTCCAAGATGCTGCTCGCTAGTGTAGACCTTGGATGCAGCGATGAAATTTTAACCATCATTGCCATGATCCAAACTGGGAACATATTCTACAGG CCTAGAGAGAAACAAGCACAGGCTGATCAGAAGAGGGCGAAATTTTTCCAGCCGGAAGGAGACCACTTGACCTTACTTGCTGTTTATGAGGCCTGGAAAG CTAAGAACTTCTCTGGCCCTTGGTGCTTCGACAACTTCGTTCAGTCCAGATCCTTGCGGAGGGCACAAGACGTCAGAAAGCAGCTTCTCACCATCATGGA CAAGTATAAGCTAGATGTTGTCACCGCTGGAAAGAACTTCACAAAGATAAGGAAAGCCATCACTGCCGGTTTCTTCTTCCACGCGGCCAGAAAGGATCCA CAGGAGGGTTACAGGACTTTGGTCGAGAACCAGCCAGTCTATATCCATCCGAGCAGTGCTCTTTTCCAGCGACAGCCAGATTGGGTGATCTATCATGAAC TGGTGATGACGACGAAGGAGTACATGCGAGAAGTCACGGTCGTGGATCCGAAATGGCTCGTCGAGCTTGCACCTCGGTACTTCAAAGTTACGGATCCCAC GAAAATGAGCAAGCGCAAACGCCAGGAGCGTATAGAGCCTCTTTACGATCGGTACCACGAACCGAACTCGTGGCGGTTGAGTAAACGGCGAGCTTAG
AA sequence Show only first row Show all	>Lus10036783 pacid=23171270 polypeptide=Lus10036783 locus=Lus10036783.g ID=Lus10036783.BGIv1.0 annot-version=v1.0 MVTAKDDDLKKLEYLSLVSKVCTELETHLGIGEKVAAEFITDMGRQSASVDEFDSKLKENKLDMPDYLMRTLLTIIHAILPPKPKVEETGGRGKYKSLSI ADGKERVRQIEQEIEMEAKVMVKDDNRYGDRDRKDRENGRDRDRGRGRYMDKERDRDRGGRDRDREHERERHRDRDYDTGYGDDDNGRRGGRERDDYRNR EKHRGRDSHRRDEDDNRDNGYDRQDDGGGDRAGRNTGHSSQEPELYHVYKGRVSRVMDSGCFVQLNDLKGKEGLVHVSQIATRKIGNAKDVIKRDQEVFV KVISVSGQKLSLSMRDVDQHTGRDLLPLKKSSDDDSHRANPSGTRDGPRARTGLSGIRIVEEDDAIPSRRPLKRMSSPEIWEAKQLIASGVLSVKEFPMY DEEADGLLYEEEGAEEELEIELNEDEPAFLQGQTRSSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGER HLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSLQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAESGYTTKGKIGCTQPRR VAAMSVAKRVAEEFGCRLGEDVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATL DAEKFSGYFFSCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDFACQCLFDRMKALGKNVPELIILPVYSALPSEM QSRIFDPAPAGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSVPEI QRINLGMVTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYR PREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFDNFVQSRSLRRAQDVRKQLLTIMDKYKLDVVTAGKNFTKIRKAITAGFFFHAARKDP QEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRYFKVTDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	0	1
AT3G58110			unknown protein		Lus10039903 [exp]	2.4	0.7959
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	2.8	0.8082
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	4.2	0.7581
					Lus10002962 [exp]	4.2	0.7245
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	6.9	0.7436
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	7.1	0.7362
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	9.2	0.7359
AT3G60850			unknown protein		Lus10004021 [exp]	9.8	0.7297
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	10.5	0.7235
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	11.5	0.7011

Compare expression of checked genes

Lus10036783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.