Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010597 [exp] 103 / 1e-27 ND / Lus10034884 [exp] 96 / 2e-25 ND / Lus10038051 [exp] 97 / 7e-25 ND / Lus10032723 [exp] 71 / 2e-14 ND / Lus10012295 [exp] 52 / 6e-08 ND / Lus10010267 [exp] 50 / 9e-08 ND / Lus10034889 [exp] 52 / 1e-07 AT1G09190 115 / 9e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038610 [exp] 50 / 1e-07 ND / Lus10034914 [exp] 49 / 2e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036784 pacid=23171183 polypeptide=Lus10036784 locus=Lus10036784.g ID=Lus10036784.BGIv1.0 annot-version=v1.0 ATGGCAACAAAGGAGTGGGGGTACGATTGGTTTGACCGGATGTGGTATCTAGTTCCTGGGAAGACTTTTGCCGACGGTAGCGATGGCGTCATAGAGATTT ACAGTGATATCGAAGTAGTAGGTGGACTGTTGGAAGCTTCCAAGCTGGGCCCCATCCATTTGTTCTTCAATTGTGTTACGGAGCACGCCGCCGAGGACTT GTCTGTAGGAGGAATTCAGACACCAGCGCCTGTACTGGATCGACATAATGAAGATGATGGTGACGAGTCAATAGATGTAGGCGACCTGATTCACCTGTTA GATGATTCCGACCGTACAACGGGCCCAGAGTTCTATGAAGCTATGGAGAACCTAGGAATACTAGGTTTGCGTAGGAATTATCGAACTGAACGCATGGAAG ACGGGGAAGAGGTTGACCAGCTGTATGTCCGCATTCCTCCACCTGAACAGCTTAGAAATGATGAAAGTGTGAATGAAGTTCAGCCTACAACAAGGCAACA ACAGGAGTACGAGGTTCGTCAGGCAATGCAAGGAGTTGGGGCTTATGTCAACCCGACGACTGGAAACACTTACTACAGGGGGACAACTGGACCAAGGGCG ACGACTGGAACTCCGGAAGTTATCGACAGTAGACAGCGGCAGCCACCAATGACGCAGCCTGACCAGTGA
AA sequence Show only first row Show all	>Lus10036784 pacid=23171183 polypeptide=Lus10036784 locus=Lus10036784.g ID=Lus10036784.BGIv1.0 annot-version=v1.0 MATKEWGYDWFDRMWYLVPGKTFADGSDGVIEIYSDIEVVGGLLEASKLGPIHLFFNCVTEHAAEDLSVGGIQTPAPVLDRHNEDDGDESIDVGDLIHLL DDSDRTTGPEFYEAMENLGILGLRRNYRTERMEDGEEVDQLYVRIPPPEQLRNDESVNEVQPTTRQQQEYEVRQAMQGVGAYVNPTTGNTYYRGTTGPRA TTGTPEVIDSRQRQPPMTQPDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036784 [exp]	0	1
					Lus10020274 [exp]	1.0	0.9333
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	1.4	0.9247
AT5G11280			unknown protein		Lus10026797 [exp]	3.5	0.8461
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	5.2	0.9239
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	15.4	0.8036
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	20.5	0.7681
					Lus10025483 [exp]	22.4	0.8018
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	23.1	0.8426
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	25.4	0.7760
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	25.8	0.8632

Compare expression of checked genes

Lus10036784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.