Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14020 771 / 0 O-fucosyltransferase family protein (.1) AT2G03280 703 / 0 O-fucosyltransferase family protein (.1.2) AT3G02250 590 / 0 O-fucosyltransferase family protein (.1) AT5G15740 589 / 0 RRT1 O-fucosyltransferase family protein (.1) AT2G37980 395 / 4e-131 O-fucosyltransferase family protein (.1) AT3G54100 382 / 6e-126 O-fucosyltransferase family protein (.1) AT5G35570 382 / 1e-125 O-fucosyltransferase family protein (.1) AT5G64600 372 / 2e-123 O-fucosyltransferase family protein (.1) AT5G01100 374 / 8e-123 O-fucosyltransferase family protein (.1) AT1G22460 370 / 2e-122 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037144 [exp] 978 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 875 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 869 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 611 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 598 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 593 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 593 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 520 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 513 / 6e-179 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164700 [exp] 791 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 784 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 616 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 600 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 582 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 576 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 397 / 8e-131 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 385 / 1e-128 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 384 / 1e-126 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 370 / 4e-123 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036785 pacid=23171038 polypeptide=Lus10036785 locus=Lus10036785.g ID=Lus10036785.BGIv1.0 annot-version=v1.0 ATGGAGATTAGATCCGAGAGTGTTGGCGGGAGGTCGGCGGAGAAGTCGAGTTCGCCGCCGGTGATCCCTAGGACGAGGTTGCAGGTGTGGTTCATTCGAG TTTGCTCGAGTATTCTGATTTGGACTTGCTTGGTTCAGCTGGTGGCGGTTGGTGAGCTCTGGAGCCCGCGTTTCATCACTAATTTGACCACTCGAGTGTC TCAGATCGCTGATCCTCTCCATGTCGTTCAGGTCTCCGTCCAGCCACCGCTTCCTCTTCCTTCGGCGAGAAATTACACGAGTAACGGTTTCCTTAAGGTG TCCTGCAATGGGGGCTTGAACCAGATGCGTTCAGCGATTTGTGACATGGTTGCTGTTGCTCGGCTGTTGAATCTGACTTTGCTTGTACCAGAACTTGATA AAACATCCTTTTGGGCTGACCCCAGTGATTTTGAAGACATCTTTGATGTGAGGCATTTTATCGACTCGCTAAGAGATGAAGTTCGAATTGTTAGAAGACT GCCAAAGAGAATTAGTAAGAAGTATAGATATAGAGTATTGGAGATGCCGCCAGTTAGCTGGTCGAATGAGAAGTACTACCTAGAACAGACGAAATTTGCA GAAGTTCACTTTTACCTTACGGGTGGCCTTCCTTTTGCTTCTGTTGCGCAGGTTTTGCCACTGTTCAACAAGTCAAAGGTATTGCATTTCAATAGAACCG ATGCACGCTTGGCAAACAATATGATTCCACCTGAACTTCAGAAGCTCCGGTGCCGTGTCAATTTCCAGGCACTAAAATTCACTCCCAAAATTGAGAGTTT GGGTCAGAAATTGGTACACGTTCTTCAGGAAAGGGGTCCTTATGTGGCTTTACATCTCAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGTACCCAT GGTTGTACACAGGAAGAATCTGACCAGCTTAAACGGTTAAGGTATGCATACCCTTGGTGGCGAGAAAAAGAGATAAACTCCGAGGAGAGAAGATCCCAAG GTTTATGCCCTCTGACTCCGGAAGAAGCAGCCTTAATTTTACAAGCTTTAGGCGTTGACAAGGAAACCCAGATATATATAGCCGCTGGTGAGATATATGG CAGTGGACGAAGACTCGCAGCACTAAGAACTGCATTCCCTCGTATAGTGAGAAAGGAAACACTTTTAGACCCATTGGAGCTGCAGCAGTTCCAGAATCAT TCATCTCAAATGGCTGCCCTAGATTTTATGGTCTCAGTAGCCAGCAACACTTTCATCCCTACCTACGACGGGAACATGGCAAAAGTTGTCGAAGGCCATC GCAGGTATCTAGGATTCAAGAAGACAATCCTGCTCGACCGAAGAAGACTCGTAGAATTACTGAATCTGCATCAAAACGGTACACTTCCCTGGACCGAATT CACGGTCGCTGTTCGCCAGGCACACGAAACGAGAATGGGACAGCCGGTTCGTCGCAGGGCTATCCCCGATAAGCCGAAGGAGGAGGATTACTTCTACTCA AACCCTCAGGAGTGTCTATGTGAGGGAACAAATTGTGATGACCTACTCGGCACTCGCAACTCCAGTTCCTTCTGCTGA
AA sequence Show only first row Show all	>Lus10036785 pacid=23171038 polypeptide=Lus10036785 locus=Lus10036785.g ID=Lus10036785.BGIv1.0 annot-version=v1.0 MEIRSESVGGRSAEKSSSPPVIPRTRLQVWFIRVCSSILIWTCLVQLVAVGELWSPRFITNLTTRVSQIADPLHVVQVSVQPPLPLPSARNYTSNGFLKV SCNGGLNQMRSAICDMVAVARLLNLTLLVPELDKTSFWADPSDFEDIFDVRHFIDSLRDEVRIVRRLPKRISKKYRYRVLEMPPVSWSNEKYYLEQTKFA EVHFYLTGGLPFASVAQVLPLFNKSKVLHFNRTDARLANNMIPPELQKLRCRVNFQALKFTPKIESLGQKLVHVLQERGPYVALHLRYEMDMLAFSGCTH GCTQEESDQLKRLRYAYPWWREKEINSEERRSQGLCPLTPEEAALILQALGVDKETQIYIAAGEIYGSGRRLAALRTAFPRIVRKETLLDPLELQQFQNH SSQMAALDFMVSVASNTFIPTYDGNMAKVVEGHRRYLGFKKTILLDRRRLVELLNLHQNGTLPWTEFTVAVRQAHETRMGQPVRRRAIPDKPKEEDYFYS NPQECLCEGTNCDDLLGTRNSSSFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	0	1
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	3.6	0.8528
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	10.2	0.8083
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	10.5	0.7934
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	14.1	0.7704
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	14.4	0.7722
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	15.2	0.7425
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	16.9	0.8084
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	18.3	0.7808
AT3G12590			unknown protein		Lus10001698 [exp]	18.5	0.7872
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	18.7	0.7328

Compare expression of checked genes

Lus10036785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.