Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13990 293 / 1e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037142 [exp] 450 / 3e-161 AT1G13990 305 / 1e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164400 [exp] 342 / 1e-118 AT1G13990 314 / 6e-108 unknown protein Potri.008G090900 [exp] 218 / 1e-70 AT1G13990 187 / 3e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036787 pacid=23171226 polypeptide=Lus10036787 locus=Lus10036787.g ID=Lus10036787.BGIv1.0 annot-version=v1.0 ATGGATTCCGTGGCGTCGATTTCTCCGTCCATGGTTCTCCCGCCAAGTAACCTCCTCACTCTCCGGCGTCCTCGAGCTTCGTCCTTATCGTGTTCCTCTT CTTCCTCTCGTAATCGCCGGTGGCAGCTCTTCCTTCCTCGCCTCACTTGCTCGTACAATTCGGATTTGTCGTTTCGGTTTCGGAGACGAGGAAGGCCAGC TTATGGTGGAATGAACGCCGGCGGTGCTGGAGGTGGAGGAGACGACGAACCTGATGAAGAATTGGAGAGAGCTATTCATTTGGACGGGACTATCCCGGGA ACATCCGATGAGTTTGTGAAGCAGGTCTCCTCTCGCGCCTACGATATGAGGAGGAATCTTCAGCAGACTTTCGATAGCAGCAGCTACGACGTCCTGGAAT CTAATCCATGGAGAGAAACATCCAAGCCAGTGTATGTACTAACTCACAGAGATAACCAACTCTGCACTATGAAAACCCGAAGAAGTCGCAGTGAAGTCGA AACAGAGCTAGGGATGTTGTTTTCCAAAGGAGGGAAGAGGAGGCCTGATATGGCGAACCAGGCCAAGAAGCTGAAACCCGGGACTAAGTTCCAGATGCTT GTGGAGGATATCAGAGAAGGAGTTCTAGTAGGCTGTGCAACTATTTCTTGGCAGGTGTTTGAAGACGAGAATGAAGCTGTGAAATACTGCGATTTACTAC AAGGAGGATGTGAAGGCGTAGCAGAAATCGAAGCCTCATCTGTGTTTGATCTTTGCCGCAAAATGAGGGGTCTCGCTGTTCTGTTCCGTAGAGGGAGGAC TCCGCCATTACCCCAGAGCCTCGAGCTCAATCTCAAGGCCCGCAAGCGGTCTCTGGAAGACCAAGAAGATGCAGCATGA
AA sequence Show only first row Show all	>Lus10036787 pacid=23171226 polypeptide=Lus10036787 locus=Lus10036787.g ID=Lus10036787.BGIv1.0 annot-version=v1.0 MDSVASISPSMVLPPSNLLTLRRPRASSLSCSSSSSRNRRWQLFLPRLTCSYNSDLSFRFRRRGRPAYGGMNAGGAGGGGDDEPDEELERAIHLDGTIPG TSDEFVKQVSSRAYDMRRNLQQTFDSSSYDVLESNPWRETSKPVYVLTHRDNQLCTMKTRRSRSEVETELGMLFSKGGKRRPDMANQAKKLKPGTKFQML VEDIREGVLVGCATISWQVFEDENEAVKYCDLLQGGCEGVAEIEASSVFDLCRKMRGLAVLFRRGRTPPLPQSLELNLKARKRSLEDQEDAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13990			unknown protein		Lus10036787 [exp]	0	1
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	1.4	0.9057
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	1.7	0.9093
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	3.5	0.8941
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	5.5	0.8626
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	6.3	0.8753
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	8.1	0.8723
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	8.8	0.8699
AT5G61670			unknown protein		Lus10016713 [exp]	9.8	0.8678
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10034832 [exp]	9.9	0.8607
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	10.0	0.8451

Compare expression of checked genes

Lus10036787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.