Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26670 243 / 3e-81 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT5G39510 203 / 1e-65 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT3G29100 139 / 5e-41 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 107 / 2e-28 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037141 [exp] 344 / 4e-121 AT1G26670 324 / 1e-113 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10026134 [exp] 222 / 1e-73 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021624 [exp] 209 / 9e-68 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10034696 [exp] 206 / 8e-66 AT5G39510 318 / 5e-110 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 130 / 3e-37 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 87 / 2e-19 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091000 [exp] 276 / 2e-94 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 273 / 5e-93 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.017G087700 [exp] 218 / 1e-71 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.004G115700 [exp] 218 / 3e-71 AT5G39510 325 / 5e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] Traffic PF05008 [flax] [poplar] V-SNARE Vesicle transport v-SNARE protein N-terminus
Representative CDS sequence Show only first row Show all	>Lus10036788 pacid=23171112 polypeptide=Lus10036788 locus=Lus10036788.g ID=Lus10036788.BGIv1.0 annot-version=v1.0 ATGAGCAACGTATTCGAAGGATACGAGCGGCAGTACTGCGAGCTCTCCGCTGGTCTGTCTCGCAAGTGCAACTCCGCTTCTCTCCTTCCCGACGGAGATG AGAGGAGAGGGAAGATTGAGGAGATAAAATCGGGGTTAGAGGAGTGCGATGTCTTTGTGAGGAAGATGGATCTTGAGGCGAGGAGTTTGCAGCCGAGTGC GAAGGCGATGATGCTTGCTAAGCTTAGGGAGTACAAGTCTGATCTGACTAAGTTGAAGAGGGAATTCAAAGCGATTGCGTCCGGAAACCAAGCTGCTCAC CAGGAGTTGTTGGAATCTGGATCGGCCAATTCAAATCCGGTTTCAACAGAGCAGAGAGAAAGGCTGACTATGTCCATTGACAGATTAAACCAGTCAAGCG ACAGAATCCATGAGAGTAGAAGAACTGTGCTTGAGACAGAAGAACTTGGCATCAACATTCTTGAAGATTTGCACCAACAACGGCAGACTCTACTTCATGC CCATAACAAGGTACCATCCGGTGCTCCTGTTTCAACAGAGCAGAGAGAAAGGCTGACTATGTCCATTGACAGATTAAACCAGTCAAGCGACAGAATCCAT GAGAGTAGAAGAACTGTGCTTGAGACAGAAGAACTTGGCATCAACATTCTTGAAGATTTGCACCAACAACGGCAGACTCTACTTCATGCCCATAACAAGG TACCATCCGGTGCTCCTGTTCTTCCATTACTGAGTGTGTTGAACTAA
AA sequence Show only first row Show all	>Lus10036788 pacid=23171112 polypeptide=Lus10036788 locus=Lus10036788.g ID=Lus10036788.BGIv1.0 annot-version=v1.0 MSNVFEGYERQYCELSAGLSRKCNSASLLPDGDERRGKIEEIKSGLEECDVFVRKMDLEARSLQPSAKAMMLAKLREYKSDLTKLKREFKAIASGNQAAH QELLESGSANSNPVSTEQRERLTMSIDRLNQSSDRIHESRRTVLETEELGINILEDLHQQRQTLLHAHNKVPSGAPVSTEQRERLTMSIDRLNQSSDRIH ESRRTVLETEELGINILEDLHQQRQTLLHAHNKVPSGAPVLPLLSVLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	0	1
AT3G14830			unknown protein		Lus10041938 [exp]	2.2	0.9472
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	4.0	0.9355
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	4.2	0.9444
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	4.2	0.9384
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	5.5	0.9255
AT3G14830			unknown protein		Lus10005552 [exp]	10.9	0.9099
AT2G38480			Uncharacterised protein family...		Lus10001266 [exp]	11.8	0.9027
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	12.0	0.9260
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	13.9	0.9119
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	15.5	0.9157

Compare expression of checked genes

Lus10036788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.