Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13980 2272 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 1749 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 1006 / 0 GNL2 GNOM-like 2 (.1) AT1G01960 333 / 2e-93 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 282 / 4e-77 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 270 / 4e-73 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 252 / 1e-67 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 204 / 1e-52 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037140 [exp] 2719 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 2392 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 2385 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10034615 [exp] 821 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10021771 [exp] 787 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10009300 [exp] 340 / 2e-95 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 286 / 2e-78 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 255 / 2e-68 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 243 / 8e-65 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078900 [exp] 2382 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 2197 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 1013 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.014G070600 [exp] 336 / 4e-94 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 332 / 9e-93 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 259 / 1e-69 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 252 / 1e-67 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 209 / 2e-54 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10036789 pacid=23171081 polypeptide=Lus10036789 locus=Lus10036789.g ID=Lus10036789.BGIv1.0 annot-version=v1.0 ATGCAGTCTAGGATCAAGGCAATTGAGGAAGAGCCTGTAGCCTATTCTAACAAATCTACTTTAGCGTGTATGATTAATGTTGAAGTGGGTGCTGTTCTAG CTGTAATGCGGAGGAACGTGAGGTGGGGCAGTCGGTATATGTCGGGTGATGATCAATTAGAGCACTCTTTGATACAGTCTCTTAAGGGATTGAGGAAGCA GATATTCTCATGGCAGCAACCGTGGAATTCTGTTAATCCTGCAGATTACCTCCAACCGTTTTTGGAAGTTATTCGATCGGCTGAAACTGGTGCACCAATT ACTGGGGTTGCTTTATCGTCTGTGTACAAGATACTGACACTGGATGTGATTGATCAAAATACTGTGAATGTGGAAGATGCTATGCACTTGGTGGTTGAAG CGGTGACTGGTTGTCGATTTGAGCTGACAGATCCTGCATCTGAGGAAGTTGTCCTGATGAAAGTTCTTCAGGTTCTTCTTGCGTGCATGAAAAGTAAAGC ATCAGTTATGTTGAGCAATCAGGATGTCTGTACAGTTGTAAATACTTGTTTCCGTATAGTCCATCAAGCAGGAAACAAGGGTGAGCTATTGCAGCGGATG GCTCGTTACACAATGCACGAACTTATTAGATGCATTTTTTCACATCTTCCTGATGTTGATAAGACAGAACAAGCATTGGTGAATGGAGTTAGTACCGTCG AGCCAGAGATAGGTGGACTAGACAGCAATAATGCATTTGGAAGTAAACAAGTAGAAAATGGAAACAGTAACACTGAATTAGATGGCCAGCCAACATCTTT GAGCCTAAGTTCCAATTCCACTGCTATGGTGTCAAGTACTATGGAAGATAGCTCAATAGGGGCGGGTAATGGAAGTGATGCCTTTTCTTATGATCAGCAA CTTATGAAAGAACCATATGGGGTTCCTTGCATGGTGGAAATATTTCATTTCTTGTGTTCATTGTTAAATGCTGTTGAGCATATGGGAATGGATCCCAGAT CAAATACAATAGCGTTTGATGAAGATGTGCCCCTTTTCGCCTTGGGCTTAATTAATGCAGCTATAGAATTGGCTGGACCTTCAATACGCTATCACCCCAG GTTACTGACACTGATTCAGGATGAACTGTTCCAGAATCTGATGCAATTTGGTTTGTCAATGAGCCCACTTATTCTCTCAATGGTGTGTAGTATAGTTCTG AGCCTGTACCATCATTTGTATTCCGAAATTAAGCTACAACTTGAGGCTTTCTTCTCTTGTGTGGTTTTAAGACTGGCACAGAGCAGATATGGTGCTTCAT ATCAGCAGCAAGAGGTTGCTATGGAGGCTCTTGTAGATTTCTGTAGACAGAAGACTTTCATGGTGGAGATGTATGCTAACTTGGATTGTGACATAACATG CAGCAATGTGTTTGAAGAACTCGCTAATCTGTTGTCAAAAAGTGCATTTCCTGTTAACTGCCCTTTGTCTGCTATGCACATTCTTGCTTTGGATGGCCTG ATTGCTGTAATTGAGGGGATGGCTGAGAGGATAGAAAATGAGCCTGGTAATCCTGAGCAGGTTCCAGTGAGCCTTGAGGAGTATACACCATTTTGGGAGG TGAAATGTGACAATTACAACGATCCTACTCAATGGGTTCCGTTTGTCCGCAGAAGAAAGTACATCAAGCGAAGGTTGATGATTGGAGCTGACCATTTCAA TCGTGATCCCAAGAAGGGCCTGGAATTTCTCCAAGGAACACATCTATTACCAGAAAAACTTGACCCGCAAAGTGTGGCATGCTTTTTCAGATACACAGCT GGATTGGATAAAAACCTTGTTGGGGACTTCCTCGGCAATCATGACGAGTTTTGTGTTCAGGTTCTTCATGAGTTTGCTTGTACTTTTGATTTTGAAGATA TGAATTTGGATACAGCTCTGAGGTTGTTCTTAGAAACTTTTAGGTTGCCAGGAGAATCACAGAAAATTCAAAGAGTGCTTGAGGCATTTTCTGAGAGATA CTACGAGCAATCACCACAGATTTTAGCTAACAAGGATGCTGCTCTTCTTCTGTCTTACTCTATTATAATGCTCAACACAGATCAGCACAATGTACAGGTG AAGAAAAAGATGACCGAAGAGGATTTTATCCGGAATAATAGGCATATCAATGGAGGCCAGGATTTGCCACGGGAATTCCTGACTGAACTTTATTACTCAA TTTGCAAGAATGAGATTCGTACTATTCCTGATCAAGGTGCTGGTTTTGCTGAAATGAACCCCAGCCGCTGGATTGACCTGATGCTCAAGTCCAGGAAAAC CGCTCCTTATATCGTTTGTGATTCAATAGCCGACCTTGACCACGACATGTTTGCAATAATGTCTGGTCCAACCATAGCTGCCATATCTGTTGTATTTGAT CATGCAGAACATGAAGAAGTTTACCAAACATGCATCAACGGTTTTCTAGCTGTTGCAAACATTTCAGCTTGCCATCATCTTGAAGACGTACTGGATGATC TAGTAGTATCTCTGTGTAAGTTCACCACTCTTTTGAATCCATCGTCTATTGAGGAACCTGTGCTAGCATTTGGCGACGATGCAAAGGCTAGGATGGCAAC TGTGACTGTTTTCACCATTGCAAACAGGTACGGTGACTATATTCGCACTGGGTGGAGAAATATTGTGGACTGCATTCTACGATTGCACAAACTCGGTCTC CTGCCAGCCCGCGTAGCTAGTGATGCTGCTGATGAATTAGAAACTTTTCCCGAGCTTACACAGGGGAAGCCCGTCACAAATCCTGTGTCTTCTGTTCAAA TGCAACAGGCTGGAACTCCCAGGAAGTCGTCTGGATTTATGGGTCGGTTCAGTCAACTCTTATCTCTTGATGTTGAGGAGCCTAGATTACAACCTACGGG GCAAGAGCTTGCTGCTCACCAACGCACTGTCGAAACTATTCAGCAGTGCCACGTAGACAGTATATTCACCGAGAGTAAATTCTTGCAAGCTGAATCCTTA TCGCAGCTTGCAAAGGCACTAATTTGGGCTGCAGGTCGGCCACAGAAAGGGGCTAGTTCTCCAGAGGATGAAGATACATCCGTATTCTGCCTGGAGTTGC TGATTGCAATCACGTTAAACAACCGAGATCGGATAATCCTATTATGGCAAGGTGTGTACGAGCACATTGCTAGCATCGTTCAGTCAACTGTGATGCCGTG TGCTTTAGTAGAGAAGGCTGTATTTGGACTTTTACGAATATGCCAGCGGCTGCTCCCCTACAAAGAAAACTTTGCGGACGAACTTTTAAGGTCACTTAAT CTTGTTCTGAAGCTTGATGCCCGTGTTGCTGATGCATACTGTGAGCAAATCACGCAGGAAGTAACTCGCCTAGTAAAGGCTAATGCCACTCACATCAGAT CTCTAATGGGATGGCGAACAATCACATCCTTGCTTTCAATCACAGCTCGGCATCCGGAAGCTTCCGATGCAGGATTCGATGCCCTGCTATTTATCATGAG CGGTGGTGCTCACCTCTTGCCAGCCAATTACATCCTCTGCGTTGATGCAGCTAGACAATTTGCAGAGTCTCGAGTTGGACAATCTGAAAGGTCTTTACAT GCTCTAGATCTTATGTCAGGTTCCGTCGATTGCTTAACGCAGTGGTCTAACGAGGCTAAGGCAGCCATGGGAGATGAGGAAGCTGCAAAGCTGTTGCAGG ATATCGGCGAAATGTGGTTGAGATTGGTGCAGGGGGTAAGAAAAGTTTGTTTGGATCAAAGAGAAGAGGTCAGGAACCACGCCCTTCTATCGTTGCAAAA ATGTCTCACAAACAATCTTGACCTTCTGCCCGGTTTGTGGTTACAGTGCTTCGACACGGTGATCTTCACAATGCTGGATGACCTGCTCGAAATCGCTCAA GGACACTCCCAAAAGGAGTACAGAAACATGGAAGGGACACTTATCATCGCAATCAAACTCATGTCGAAAGTGTTCCTCCAGCTCCTGCAAGACCTCGCGC AGCAACTGACGACATTCTGCAAGTTGTGGCTGGGAGTGCTGGGGAGGACGGAGAAGTACATGAAGGTGAAAATAAGAGGGAAGAAGAGCGAAAAGCTTCA GGAAACTATACCCGAGCTCCTCAAGAACATCTTACTCATCATGAAGACCACTGGAGTTCTGGTTCGCCCCCTGGAGTTCTGGTCCAGAGCAGGCCCAGCC TGTGGGAGCTGA
AA sequence Show only first row Show all	>Lus10036789 pacid=23171081 polypeptide=Lus10036789 locus=Lus10036789.g ID=Lus10036789.BGIv1.0 annot-version=v1.0 MQSRIKAIEEEPVAYSNKSTLACMINVEVGAVLAVMRRNVRWGSRYMSGDDQLEHSLIQSLKGLRKQIFSWQQPWNSVNPADYLQPFLEVIRSAETGAPI TGVALSSVYKILTLDVIDQNTVNVEDAMHLVVEAVTGCRFELTDPASEEVVLMKVLQVLLACMKSKASVMLSNQDVCTVVNTCFRIVHQAGNKGELLQRM ARYTMHELIRCIFSHLPDVDKTEQALVNGVSTVEPEIGGLDSNNAFGSKQVENGNSNTELDGQPTSLSLSSNSTAMVSSTMEDSSIGAGNGSDAFSYDQQ LMKEPYGVPCMVEIFHFLCSLLNAVEHMGMDPRSNTIAFDEDVPLFALGLINAAIELAGPSIRYHPRLLTLIQDELFQNLMQFGLSMSPLILSMVCSIVL SLYHHLYSEIKLQLEAFFSCVVLRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEELANLLSKSAFPVNCPLSAMHILALDGL IAVIEGMAERIENEPGNPEQVPVSLEEYTPFWEVKCDNYNDPTQWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPEKLDPQSVACFFRYTA GLDKNLVGDFLGNHDEFCVQVLHEFACTFDFEDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSIIMLNTDQHNVQV KKKMTEEDFIRNNRHINGGQDLPREFLTELYYSICKNEIRTIPDQGAGFAEMNPSRWIDLMLKSRKTAPYIVCDSIADLDHDMFAIMSGPTIAAISVVFD HAEHEEVYQTCINGFLAVANISACHHLEDVLDDLVVSLCKFTTLLNPSSIEEPVLAFGDDAKARMATVTVFTIANRYGDYIRTGWRNIVDCILRLHKLGL LPARVASDAADELETFPELTQGKPVTNPVSSVQMQQAGTPRKSSGFMGRFSQLLSLDVEEPRLQPTGQELAAHQRTVETIQQCHVDSIFTESKFLQAESL SQLAKALIWAAGRPQKGASSPEDEDTSVFCLELLIAITLNNRDRIILLWQGVYEHIASIVQSTVMPCALVEKAVFGLLRICQRLLPYKENFADELLRSLN LVLKLDARVADAYCEQITQEVTRLVKANATHIRSLMGWRTITSLLSITARHPEASDAGFDALLFIMSGGAHLLPANYILCVDAARQFAESRVGQSERSLH ALDLMSGSVDCLTQWSNEAKAAMGDEEAAKLLQDIGEMWLRLVQGVRKVCLDQREEVRNHALLSLQKCLTNNLDLLPGLWLQCFDTVIFTMLDDLLEIAQ GHSQKEYRNMEGTLIIAIKLMSKVFLQLLQDLAQQLTTFCKLWLGVLGRTEKYMKVKIRGKKSEKLQETIPELLKNILLIMKTTGVLVRPLEFWSRAGPA CGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	1.0	0.9814
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	3.2	0.9651
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	4.0	0.9193
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	4.5	0.9476
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	4.9	0.9483
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	5.1	0.9241
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	5.5	0.9354
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	5.5	0.9474
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	5.7	0.9533
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	5.7	0.9341

Compare expression of checked genes

Lus10036789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.