Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69450 376 / 1e-120 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 330 / 2e-103 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 228 / 6e-65 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 227 / 2e-64 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G54510 175 / 9e-47 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G02900 171 / 9e-45 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 171 / 2e-44 early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 159 / 1e-40 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 158 / 2e-40 ERD (early-responsive to dehydration stress) family protein AT4G15430 153 / 9e-39 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037139 [exp] 552 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 461 / 1e-153 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 348 / 9e-110 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10004597 [exp] 252 / 2e-73 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 247 / 8e-72 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 173 / 4e-46 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 172 / 2e-45 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10002133 [exp] 168 / 2e-43 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10020032 [exp] 162 / 2e-41 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091200 [exp] 419 / 2e-137 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 409 / 1e-133 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 363 / 6e-116 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 238 / 2e-68 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 159 / 7e-41 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 159 / 1e-40 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 158 / 3e-40 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006000 [exp] 153 / 7e-39 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.011G009900 [exp] 150 / 1e-37 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 145 / 2e-36 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10036791 pacid=23171146 polypeptide=Lus10036791 locus=Lus10036791.g ID=Lus10036791.BGIv1.0 annot-version=v1.0 ATGATAGTATCAGCACTTCTAACTTCGTTGGGAATAAACTCTTGTCTATGTGTTCTGTTCTTCACACTGTATTCTGTACTGAGGAGACAACCGAGTTACT TAAGAGTCTTTATTCCACGCTTTCTGGCCGAAGGGGGTTCCAGACGATTACTTCGCTTGAAATTAAGAAGGTTTATACCGTCTGCAGGGTGGGTGGCAAG AGCATGGAGGTTATCTGAAGAGGACATAATATCATCCAATGGATTGGATGCTTTGGTATTCATGAGAGTCATAACTTTCTGGTGTCATAATGGTCTTATC GTTTCTAAATCAAGTTCTGCCTTGTTGGTCTTATCTGAATGGTGCAGTTTGAAAATATTTGCTTTTGCTGGAGTAATAGGGATCTTTGTTCTTCTTCCAG TGAATGCCCTGGGGACGCAACTTCATGAAATCGACTTTGCTGATATATCAAACAACTCTATGGATGTTTTCACAATCTCAAATGTAAATGATGGTTCAGA AAGCTATGCTTATGTGTTTTTGAGACTTGTTGTGTTGCTAGAGCCCAAACACTTGGTATCGAAAACTAGAACAACTTCTCACGTTTTGTTGTCCAGTTTT GTCAGGCTGTGGATTCATTTCTCTGCTGAGTACAAATATATATCGTTAAAAAGGATTGCTTATTTTTATTCTTCGGATGCTCAGCCACGCCAGTTCACCA TCTTAGTGAGCAATATTCCTGTCTCCAGTGGTAGTAGTATCAGCGATAGTGTTCAGAGATTCTTCAGAGAGAATCACCCTAATACATATCTTTCTCACGT GGTCATTCGTCGAACTAGCAAAATTCGTGATCTCACAATAACCTGGACTTGTTTCATAGGTGAAAGCAAGCAATTGACTTGGAGTCTCTTCACCTTGCTT CTCAATGTTTTTGCATGTGTCCTGACTGAAGAATGGGCAAAGAATCTATGCAAAAGGGTTATTCGCTTACGAGATAAATCCTCATATGATCAGCATCAAC ATTTTACATTGTTCACGGATAAGGCGGATCGTATGGATCACTATGAGAAGAGGCTAGAAACAATTGACCAAACATACATTAGTCAAATAATCACAGGATA CCTTCCCAGTCTAATACTACAGTTGTTTCTAAAGATTGTACCTCCCATAATGAGGTTCCTTTCCTCCATTCAAGGATATATGTATCTCAGCGAGATTGAG AAGAGTGCATGCAACAAAGTAATTTGGTTCACAGTCTGGAACGTCTTTTTCGCAACTGTGTTCTCTGGCTCCGTTTTCCACCAGCTCTCCATCGTACTCG ACCCAAAAAGCATCCCTAGAAAGCTGGGTGTTGCAGTTCCAGCTCAGGCATCGTTTTTCATTGCTTATGTTGTCACAACTGGATGGACAAGCATATCCTC GGAACTCTTTCGTGTGGTTCCCTTCCTCGGCGTTCTAATAGCTAAGCTATTTCGTAGAAGTACTGAGGATGAGGATTATGAAGTTCCCTCTATCGCTTTC CACATACACCTTCCAAGGATACTCTTCTTCGGACTTCTTGGTATCGCATATTTCTTCCTAGCACCACTCATTCTACCCTTCCTCCTGGTGTATTTCTGCA TGGTATACATCATTTTTCGTAACCAGTTCATAAACGTGTATGCACCCAAGTACGAAACCGGAGGGAGGTTCTGGCCAATGGTATACAACACCTTCATCTT CCCCCTCTTACTGATGCACGCCATAGCAGTTGGAATCTTCACACTGAAGAAGCTGCCTTGGGCATCGTCCTTAGTCTTCCCACTTCCAGTCCTCACACTT CTCTTCAACGAGTACTGCAGGAAGTGCTTCCTCCCCTTATTCTCTGCTTATCCTGCAGAGGTTTTGGTGAGGAAGGACAGAGCCGACTTCAACAGCGGTG TAATGTCCGAGTTCTACAGCAGATTGGTCACGGCCTACGAGGATCCGGCGATGGTGCCGGTTCGTTACTCCAGCAACACAGACAACCTTAGCCAACCGCT TCTATCCCCTCAATCCTGA
AA sequence Show only first row Show all	>Lus10036791 pacid=23171146 polypeptide=Lus10036791 locus=Lus10036791.g ID=Lus10036791.BGIv1.0 annot-version=v1.0 MIVSALLTSLGINSCLCVLFFTLYSVLRRQPSYLRVFIPRFLAEGGSRRLLRLKLRRFIPSAGWVARAWRLSEEDIISSNGLDALVFMRVITFWCHNGLI VSKSSSALLVLSEWCSLKIFAFAGVIGIFVLLPVNALGTQLHEIDFADISNNSMDVFTISNVNDGSESYAYVFLRLVVLLEPKHLVSKTRTTSHVLLSSF VRLWIHFSAEYKYISLKRIAYFYSSDAQPRQFTILVSNIPVSSGSSISDSVQRFFRENHPNTYLSHVVIRRTSKIRDLTITWTCFIGESKQLTWSLFTLL LNVFACVLTEEWAKNLCKRVIRLRDKSSYDQHQHFTLFTDKADRMDHYEKRLETIDQTYISQIITGYLPSLILQLFLKIVPPIMRFLSSIQGYMYLSEIE KSACNKVIWFTVWNVFFATVFSGSVFHQLSIVLDPKSIPRKLGVAVPAQASFFIAYVVTTGWTSISSELFRVVPFLGVLIAKLFRRSTEDEDYEVPSIAF HIHLPRILFFGLLGIAYFFLAPLILPFLLVYFCMVYIIFRNQFINVYAPKYETGGRFWPMVYNTFIFPLLLMHAIAVGIFTLKKLPWASSLVFPLPVLTL LFNEYCRKCFLPLFSAYPAEVLVRKDRADFNSGVMSEFYSRLVTAYEDPAMVPVRYSSNTDNLSQPLLSPQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	1.0	0.8899
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	2.0	0.8435
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	2.8	0.8255
					Lus10038470 [exp]	4.7	0.7926
					Lus10038468 [exp]	6.2	0.7840
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	13.0	0.7842
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	13.3	0.7783
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	13.7	0.7784
AT5G43680			unknown protein		Lus10040152 [exp]	14.5	0.8147
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	14.5	0.7327

Compare expression of checked genes

Lus10036791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.