Plant FIBer expression Database

Lus10036792 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49210 117 / 5e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037138
[exp]
253 / 2e-86 AT5G49210 167 / 2e-52 unknown protein
Lus10032604
[exp]
218 / 7e-73 AT5G49210 188 / 7e-61 unknown protein
Lus10043148
[exp]
211 / 3e-70 AT5G49210 186 / 3e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G317300
[exp]
144 / 8e-44 AT5G49210 93 / 6e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10036792 pacid=23171041 polypeptide=Lus10036792 locus=Lus10036792.g ID=Lus10036792.BGIv1.0 annot-version=v1.0
ATGACTACCGGCACCACCGCTAGTGGCGTCGTCCGTTCGACGCGCCGCCTCTTCTCCTCCTACCCCATTGCCACCAGGAAGAACAACCACACGGATACTC
ACACCTTCCTGGACAGGAATTGTTTCTTGGGAAGCTGGGAAGCACCGAAGCATAATCCAAAGGAGGCTGAGAAAAGACTGGCTCTGTTACGGAGACAGTA
TGCGAAGCAAGTGAAGGAGGTGCGGAAAGAGTATGGTGTGGAAATGGAGGCGATGCGGATCGAGAAGCGGAGGAAAGACGAAGCCAGACAAGAGGCTATC
AGGATCGCCAACGAGGAACGCCGTAAGTTGAAGGCGGAAGCCGCCAAAGTTCGAGCCGAGGAGCGTAAAGTTGCTGAAGAGGAGTTCCGCCAAACCCTAT
TGAAAGAGCGAGCGGAGAAGCTTGAGAACTGGAGAAGGAAAGAAGGTGAGAGGGAGAAGAAGAAGAAGGAAGCAGTGGAGCTGCTGCGCCGGAAAAGTTC
ACTGTGGGTTGATGATGAGAAAGAATTGGAGGCTAAAGTAATCCAAGCCATTTCTGCTTCTAATATACTGTGA
AA sequence
>Lus10036792 pacid=23171041 polypeptide=Lus10036792 locus=Lus10036792.g ID=Lus10036792.BGIv1.0 annot-version=v1.0
MTTGTTASGVVRSTRRLFSSYPIATRKNNHTDTHTFLDRNCFLGSWEAPKHNPKEAEKRLALLRRQYAKQVKEVRKEYGVEMEAMRIEKRRKDEARQEAI
RIANEERRKLKAEAAKVRAEERKVAEEEFRQTLLKERAEKLENWRRKEGEREKKKKEAVELLRRKSSLWVDDEKELEAKVIQAISASNIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49210 unknown protein Lus10036792
[exp]
0 1
AT1G65290 MTACP2 mitochondrial acyl carrier pro... Lus10020221
[exp]
3.9 0.8356
AT5G11760 unknown protein Lus10008481
[exp]
7.3 0.8367
AT2G36130 Cyclophilin-like peptidyl-prol... Lus10021335
[exp]
8.1 0.8051
AT1G23750 Nucleic acid-binding, OB-fold-... Lus10029155
[exp]
8.9 0.8301
AT1G20430 unknown protein Lus10021831
[exp]
11.3 0.7977
AT2G44820 unknown protein Lus10036053
[exp]
12.2 0.8394
AT2G28910 CXIP4 CAX interacting protein 4 (.1) Lus10004961
[exp]
14.0 0.8180
AT4G22380 Ribosomal protein L7Ae/L30e/S1... Lus10015295
[exp]
15.2 0.7838
AT2G38130 ATMAK3 Acyl-CoA N-acyltransferases (N... Lus10041514
[exp]
15.2 0.8172
AT5G47570 unknown protein Lus10000735
[exp]
15.7 0.8235

Lus10036792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.