Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69440 1212 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 617 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 587 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 562 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G31280 532 / 1e-172 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 528 / 2e-169 AGO3 ARGONAUTE 3 (.1) AT5G21150 397 / 6e-123 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 385 / 4e-118 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 337 / 6e-101 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 322 / 1e-95 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037136 [exp] 1815 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 1762 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10031331 [exp] 611 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 608 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 602 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 600 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 595 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10040619 [exp] 587 / 0 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10018290 [exp] 574 / 0 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163800 [exp] 1396 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.006G118600 [exp] 614 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 611 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 611 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.001G213700 [exp] 602 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.008G158800 [exp] 595 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 594 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G081300 [exp] 592 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G118700 [exp] 570 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.014G159400 [exp] 389 / 6e-120 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10036794 pacid=23171042 polypeptide=Lus10036794 locus=Lus10036794.g ID=Lus10036794.BGIv1.0 annot-version=v1.0 ATGGAGGACACAGCAGAACGACCAAAACCCACCAAGAAATACACCACAACACCAACAAAGAACAAATCTTTCAGAGGCAGAGCATCTTCAAAAGCCAATA CCACCATTGCTGCTGCTACAAACCACCATCAGTTTCAGTACCGTTATCACCACCATTACAATCATCATCTGAATCTGAATCAGAATCAGCAGCTGTTTCA GTACTACTCAAACAACAATCACCATTTGTTCAATCATGGCGGATTCTTCAATCAGACCTACCATTATTACCCAACTCCATTCCCTCATCTTCCAGCTATA GTACCTCCTTCAATACCTTCCTCTCAGTTTCACCAACACAGCTTTCTTCCCAAAACCCATCTCCATGACACCAATCCAGCCTCATATGGACCTGCAATTT CATCAGGTGGTGGTGAGGTACAAGGAAGGAAAGTAATGGGCGGTTCCCATAAACGACTAGAGACGGTTGATGCTGTAGTAGTTGCAAAAAGGCCTGATTC TGGTGGAGTTGAAGGCTCAATGATCACACTTCTAGCCAATCATTTCCTTGTAAAGTTTGATCCTTCCCAGAGAATCTACCACTACAATGTGGAGATCTCT CCAAACCCTCCTTCCAAAGAAGTAGCCAGGATGATCAAACAGAAGATGGTGAAAGAAAACCAATCTCTTCTGTCCAATGCTCATCCATCGTATGATGGAA GGAAGAATCTTTACAGCCCTGTTCAGTTCCAAAGCGACAGGCTTGAGTTCCACATCAGCTTGCCCATCTCAAGCATCAAACTTTCTAATAGCAGCATTGA CTTGGGAGAGAAGGGAATGATGAAACTGTTTAGGGTGAACATCAACCTTGTGTCAAAGCTAAAAGGGAAAGACTTGAAGTGTTACTTGAGCAAAGAAGGA GTTGATTATGTTCCTTTACCTCAGGACTACTTACATGCTTTGGATGTCGTCCTTCGAGAGAGCCCTTCTGAGAATTGCATACCGGTAGGGCGATCGATGT ATTCGAGTTCCATGGGAGGTGCTAGGGAGATTGGAGGTGGAGCTGTGGGTCTGAGAGGGTTTTTCCAGAGCCTTAGGCCAACTCAGCAAGGGTTAGCTCT CAATGTTGACTTTTCAGTGACTGCATTTCATGCGAGCAATATTGGGGTTATTTTTTACTTGCAGAAGAGGCTAGAGTTTCTCCATGACCTTCCTAAAAGG AAGCTGAGGAGTTTGAATGGTGAAGAGAGGAAAGAAGTTGAGAGAGCTTTAAAGAACATAAGGGTGTTTGTTAGTCATAGGGAGACTGTTCAGAGGTATA AAGTTTATGGCTTGACTGATGAAGCTACTGAGAATCTCTGCTTTGCTGATAGAGATGGGACGATTCTTCAAGTGGTGGATTACTTCAGAGACCATTATGG CTATGACATTCAGTTCAGGAACTTGCCTTGCTTGCAGATTAGTAGGAGCAAGCCTTGCTATCTGCCTATGGAGCTTTGCATGATCTGTGATGGCCAGAAG TTTATGGGAAAGCTTTCAGATGATCAAACTGCTAAGATACTTAACATGGGATGCCAGAGACCGAAAGAGCGAAAATCGATCATTGATGAAGTCATGCAAG GACCAGCTGGACCAACAAGTGGCAATCAAGCCAAGGAGTTCAGGCTCCATGTCTCAAGGGAAATGACAAGGTTAAAGGGGAGAATTCTCCAGCCTCCAAA GCTGAAACTTGGCAATGGTGGACATGTAAAGGACTTGGTCCCATCTCGACACGATCGACAGTGGAACCTCCTCGATGGCCATGTCTACGAAGGAACGAAG ATCGAAAGGTGGGGATTGATAAGCTTTGGAGGCAGTTCTGAGCAGAAATCCAACATTCCAAGGTTTATAAAGCAGTTATCTCACAGATGTGAACAGTTAG GCATATTCCTTAACAAAACCACAGCATCAAGCCCTCAGTTTGAGCCAACTCAGCTTCTCAACAATGCCTCACTCTTGGAGACTAAGCTAAAGAACATCCA AACAGCTGGGAATCTCCAGCTGCTGATTTGCTTGATGGAGAAGAAACACAAAGGGTATGCAGATTTGAAGAGGATAGCCGAGACAAGTGTTGGTGTAATG ACTCAATGTTGCTTGTACACCAATCTGGCCAAGTTGAGCTCACAGTTCTTAGCCAACATAGCCCTCAAGATCAATGCTAAAGTTGGTGGATGCACTGTTG CTCTTTACAACTCATTACCTTCTCAGATTCCGAGGCTACTTCATATCGATGAGCCGGTGATCTTCATGGGAGCAGATGTCACTCATCCACACCCTTTCGA CGATTCAAGTCCATCGGTCGCTGCTGTGGTTGGCAGCATGAACTGGCCAGCTGCGAACAAGTACGTTTCGCGAATGAGGTCTCAGACACATAGGCAAGAG ATCATCCATGATTTGGGGGAAATGGTGAAGGAACTGCTTGATGAATTCTACCAGGAAGTGAGCAAGCTCCCTAGGAGGATCATGTTCTTTCGAGATGGAG TGAGTGAGACACAGTTCAACAAGGTTCTCAAGGAAGAACTGCAAGCAATCAGAGAAGCATGCTCTAAATTCCCGGGTTACAGTCCATTGATCACATTCGC AGTGGTGCAGAAGAGGCACCATACCAGGCTGTTCCCTACTGATTCATCGCCGTTTGTGCAGAACTGCACAAACGACGAGAACATACCACCCGGGACGGTG GTGGACACAGTGATCACACATCCGACCGAGTTTGATTTCTACCTGTGTAGCCATTGGGGTGTAAAGGGAACTAGCAGGCCGACACATTACCATGTGTTGT GGGATGAGAATAAGTTTACTTCTGATGAGCTTCAGAAGTTGGTATATAACTTGTGTTACACGTTTGTGAGGTGCACAAAGCCTGTGTCTTTGGTTCCTCC TGTCTACTATGCACATCTGGCTGCATACAGAGGTAGGCTCTATGTAGATCGATCTTCAATGTCGGACTCTTCTTCAGGTGTGTGTAGAGCTTCCCCTCCA ACAAAGGCAACTCCTTTGCCTAAGTTGAGTGAGAATGTGAGTAAGGTCATGTTTTACTGCTGA
AA sequence Show only first row Show all	>Lus10036794 pacid=23171042 polypeptide=Lus10036794 locus=Lus10036794.g ID=Lus10036794.BGIv1.0 annot-version=v1.0 MEDTAERPKPTKKYTTTPTKNKSFRGRASSKANTTIAAATNHHQFQYRYHHHYNHHLNLNQNQQLFQYYSNNNHHLFNHGGFFNQTYHYYPTPFPHLPAI VPPSIPSSQFHQHSFLPKTHLHDTNPASYGPAISSGGGEVQGRKVMGGSHKRLETVDAVVVAKRPDSGGVEGSMITLLANHFLVKFDPSQRIYHYNVEIS PNPPSKEVARMIKQKMVKENQSLLSNAHPSYDGRKNLYSPVQFQSDRLEFHISLPISSIKLSNSSIDLGEKGMMKLFRVNINLVSKLKGKDLKCYLSKEG VDYVPLPQDYLHALDVVLRESPSENCIPVGRSMYSSSMGGAREIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHASNIGVIFYLQKRLEFLHDLPKR KLRSLNGEERKEVERALKNIRVFVSHRETVQRYKVYGLTDEATENLCFADRDGTILQVVDYFRDHYGYDIQFRNLPCLQISRSKPCYLPMELCMICDGQK FMGKLSDDQTAKILNMGCQRPKERKSIIDEVMQGPAGPTSGNQAKEFRLHVSREMTRLKGRILQPPKLKLGNGGHVKDLVPSRHDRQWNLLDGHVYEGTK IERWGLISFGGSSEQKSNIPRFIKQLSHRCEQLGIFLNKTTASSPQFEPTQLLNNASLLETKLKNIQTAGNLQLLICLMEKKHKGYADLKRIAETSVGVM TQCCLYTNLAKLSSQFLANIALKINAKVGGCTVALYNSLPSQIPRLLHIDEPVIFMGADVTHPHPFDDSSPSVAAVVGSMNWPAANKYVSRMRSQTHRQE IIHDLGEMVKELLDEFYQEVSKLPRRIMFFRDGVSETQFNKVLKEELQAIREACSKFPGYSPLITFAVVQKRHHTRLFPTDSSPFVQNCTNDENIPPGTV VDTVITHPTEFDFYLCSHWGVKGTSRPTHYHVLWDENKFTSDELQKLVYNLCYTFVRCTKPVSLVPPVYYAHLAAYRGRLYVDRSSMSDSSSGVCRASPP TKATPLPKLSENVSKVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	0	1
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036795 [exp]	1.0	0.9879
					Lus10039387 [exp]	2.4	0.9259
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	4.2	0.8938
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	11.2	0.8522
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	12.5	0.8843
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	12.6	0.8574
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	14.4	0.8439
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	15.5	0.8153
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	17.3	0.8566
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	19.5	0.8105

Compare expression of checked genes

Lus10036794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.