Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69430 414 / 5e-145 unknown protein AT1G26650 400 / 8e-140 unknown protein AT1G31130 74 / 2e-14 unknown protein AT4G19950 73 / 3e-14 unknown protein AT5G44860 69 / 9e-13 unknown protein AT5G61340 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037135 [exp] 641 / 0 AT1G69430 431 / 8e-152 unknown protein Lus10018322 [exp] 60 / 1e-09 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 49 / 2e-06 AT4G19950 410 / 1e-144 unknown protein Lus10018940 [exp] 47 / 2e-05 AT1G31130 231 / 8e-74 unknown protein Lus10036220 [exp] 45 / 4e-05 AT5G44860 265 / 3e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163400 [exp] 466 / 3e-165 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 461 / 2e-163 AT1G26650 401 / 3e-140 unknown protein Potri.006G155900 [exp] 91 / 1e-20 AT1G69430 79 / 2e-16 unknown protein Potri.006G159000 [exp] 91 / 2e-20 AT1G69430 78 / 4e-16 unknown protein Potri.015G125600 [exp] 86 / 8e-19 AT1G31130 327 / 7e-112 unknown protein Potri.007G105700 [exp] 84 / 6e-18 AT4G19950 182 / 4e-55 unknown protein Potri.007G105600 [exp] 84 / 7e-18 AT4G19950 179 / 7e-54 unknown protein Potri.005G186200 [exp] 76 / 3e-15 AT4G19950 185 / 3e-56 unknown protein Potri.012G125800 [exp] 74 / 1e-14 AT5G44860 396 / 4e-139 unknown protein Potri.015G060900 [exp] 63 / 6e-11 AT5G61340 164 / 5e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036796 pacid=23171106 polypeptide=Lus10036796 locus=Lus10036796.g ID=Lus10036796.BGIv1.0 annot-version=v1.0 ATGGGAGAAGGAATTAATGAAATGGAGGTTAGCGGGGAAGGTTCATCATCAACCCATGTCCAGAAGTTTCAGCTGGATCCATCACCATCATCAGTATCAT CACCGTCATCGCATCAGTTCAACCATCCGATGAACGCACTAGAGATCCTGAGAGAAACGGTACGGATCCTCCGGTTCAACGCCGCTTCGTTCATGCTCAT CGCTACTTTCCTTGTCTGTCCAGTTTCCGCTCTCCTTTTATCAAACGTCCTAGTCGATCAGTCCTTCGTAAAGCGGCTCACAATCAGATTAATGCTACTC GCAAAGTCCAGCGGCCTCCCCTTGAAAAGTTTCATCAAGCACTCATGCCACCGATTCGCGGAGATGGTAGTCTCTTCATCAATCTGCTTCCCTTTCTTCC TAACATTCTCACTATCCTCCAAAACCGCTGTAGTCTACTCCGTCGATTGCACCTATTCAAGAAAAGAAGTCGATTTGACCAAACTACTAGCTATAATCTG CAGGATCTGGAAGAGGGTTGCTGTAACTTATCTATGGTCATGTACAGTGATTGCCGGATGCGTCACATTGTTCTTTGTACTTCTCCTAGCACTATGCAGC ACATTCTCTGTTTTCGGTCTATGGCCGGATTTGAATCTGTACGCTGCTGTCCTGTTAGGGCTAGTGTTCTCGGTTGTATTTGCGAATTCGATCATTATAT GCAGCATTGCTGTCGTGATATCGGTGCTCGAGGATGTGTCGGGACCGCAGGCTTTGCTAAGATCGAGTTTGTTGATTAGAGGGCAGACTCAGGTTGGACT TCTTATCTATCTCGGGTCCACGATTGGGACGGCTTTTGTGGAAGGGTTGTTTGAACATAGAGTGAAGACGTTGAGCTATGGAGATGGATCTTCGAGGATA TGGGAAGGGCCGCTTTTGGTTGTTATGTATTCGTTCGTGGTGCTTGTCGATATGATGATGAGTGCGGTGTTCTACTATAGCTGTAAGTCGTACCGGATGG AAGATGCTGAAGAATGCCAGTCAATTTTGGAGACCATCAGCGTCTCCCCTCTAGGAGGAGAATTAGGAAGTTGA
AA sequence Show only first row Show all	>Lus10036796 pacid=23171106 polypeptide=Lus10036796 locus=Lus10036796.g ID=Lus10036796.BGIv1.0 annot-version=v1.0 MGEGINEMEVSGEGSSSTHVQKFQLDPSPSSVSSPSSHQFNHPMNALEILRETVRILRFNAASFMLIATFLVCPVSALLLSNVLVDQSFVKRLTIRLMLL AKSSGLPLKSFIKHSCHRFAEMVVSSSICFPFFLTFSLSSKTAVVYSVDCTYSRKEVDLTKLLAIICRIWKRVAVTYLWSCTVIAGCVTLFFVLLLALCS TFSVFGLWPDLNLYAAVLLGLVFSVVFANSIIICSIAVVISVLEDVSGPQALLRSSLLIRGQTQVGLLIYLGSTIGTAFVEGLFEHRVKTLSYGDGSSRI WEGPLLVVMYSFVVLVDMMMSAVFYYSCKSYRMEDAEECQSILETISVSPLGGELGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69430			unknown protein		Lus10036796 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	1.4	0.9128
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	2.0	0.9125
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	3.2	0.8773
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	4.5	0.8987
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	4.9	0.8752
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	5.2	0.9110
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	5.7	0.8918
AT1G21370			unknown protein		Lus10029764 [exp]	6.0	0.9053
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	6.2	0.8706
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	8.6	0.8407

Compare expression of checked genes

Lus10036796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.