Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11810 200 / 8e-62 unknown protein AT2G03330 141 / 6e-39 unknown protein AT1G31130 53 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037134 [exp] 308 / 3e-106 AT3G11810 159 / 1e-47 unknown protein Lus10030427 [exp] 126 / 7e-34 AT3G11810 114 / 3e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091600 [exp] 193 / 4e-59 AT3G11810 235 / 3e-75 unknown protein Potri.010G163300 [exp] 175 / 3e-52 AT3G11810 234 / 1e-74 unknown protein Potri.012G125800 [exp] 42 / 0.0003 AT5G44860 396 / 4e-139 unknown protein Potri.015G125600 [exp] 41 / 0.0007 AT1G31130 327 / 7e-112 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036797 pacid=23170980 polypeptide=Lus10036797 locus=Lus10036797.g ID=Lus10036797.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCGCCGCCGCTCGCTTTTTTCTACTCCACCGTCCACAACCTCCTCCTCCACCGCCACCCCTCCGGCCACCCTCCCAAATCCCTCCTCTCCA AACCCCCGCCTCTCCTACCTCGCCTCAACAAATTCAATTCTCTTAACCACCACCACCACCACCACAATTTCTCCCCCGATGAGGACGATCTTCCGTTCCC AATCGAAACCCTAGCCCTCGCCGCCGGATTCGCCGTCTTCCTCTCAATCTACACCAACCTCGCCCTCGGATCCATCACCTACAGCGTCCTCCATGGCTTC TACGGCCGGCCCGTCAAGCTCATCTCCGCCGTCAAATCCGCGTTGACTTCCTTCCTCCGCCTCCTTGTCACCCACCTCCTTATCGACCTAATGGTCTCCT TAATAACTCTCCTCTTCTTCTGCTCCTTGTACTTTGTCGCCGAGGGATTAAACTTGCTGGGCCTCGAACTCTATCCGAATTCGTCTTACTTCATCGCCCT CGCAGTGATCTACTCTGCTCTGTTGTTCATTGTCCTCCTCTACTTCAAAACCAACTGGATACTTAGCTCCGTCGTGGTTGTTGCCGAATCAAGCTGGGGG ATTTTGCCATTGAAGCGCAGCAGCTACCTGGTTAGAGGGATGCAAAGAGCGGTTTTGTATTTCTTGCTGTCATTCGGGATTCTATCAGGGGTTCTTACGT GGACCAGCTCCATTGCGGCGGCGAAACTGAGCGGTGGCGTCGGAGGGTGGAACAGTTGGTTCTTTGTGGCGCAGATTGTGGTTACTTCGGCTCTGTTGAC TCTTCTGTTGCTTTACTTCTTTGCTGCGCAGAGTGTTCTGTACATGTACTGTAAGGCTGTTCGTGGGGAGCTAGCTTCAGAGATTGTGCAGGAGTTTGCT ACTGAGTACGTCTGCTTGCCTTTCGACGATGAGAAGGTGCCTCGTCTTGTTTCTGTTGTCTATACTTGA
AA sequence Show only first row Show all	>Lus10036797 pacid=23170980 polypeptide=Lus10036797 locus=Lus10036797.g ID=Lus10036797.BGIv1.0 annot-version=v1.0 MASPPPLAFFYSTVHNLLLHRHPSGHPPKSLLSKPPPLLPRLNKFNSLNHHHHHHNFSPDEDDLPFPIETLALAAGFAVFLSIYTNLALGSITYSVLHGF YGRPVKLISAVKSALTSFLRLLVTHLLIDLMVSLITLLFFCSLYFVAEGLNLLGLELYPNSSYFIALAVIYSALLFIVLLYFKTNWILSSVVVVAESSWG ILPLKRSSYLVRGMQRAVLYFLLSFGILSGVLTWTSSIAAAKLSGGVGGWNSWFFVAQIVVTSALLTLLLLYFFAAQSVLYMYCKAVRGELASEIVQEFA TEYVCLPFDDEKVPRLVSVVYT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11810			unknown protein		Lus10036797 [exp]	0	1
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	1.4	0.9217
AT3G03330			NAD(P)-binding Rossmann-fold s...		Lus10026851 [exp]	1.7	0.9139
					Lus10035642 [exp]	2.8	0.9155
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	2.8	0.8938
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10028972 [exp]	3.7	0.8965
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	4.5	0.8831
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	4.5	0.8985
AT3G11810			unknown protein		Lus10037134 [exp]	4.9	0.9122
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	6.0	0.8973
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Lus10024799 [exp]	10.7	0.8490

Compare expression of checked genes

Lus10036797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.